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Series GSE28078 Query DataSets for GSE28078
Status Public on Mar 23, 2011
Title mRNA-Seq of whole flies from Drosophila
Project modENCODE
Organisms Drosophila ananassae; Drosophila melanogaster; Drosophila mojavensis; Drosophila pseudoobscura; Drosophila simulans; Drosophila virilis; Drosophila yakuba
Experiment type Expression profiling by high throughput sequencing
Summary We sequenced mRNA from whole flies of females and male of Drosophila melanogaster, D. simulans, D. yakuba, D. ananassae, D. pseudobscura, D. mojavensis, and D. virilis as part of the modENCODE project to validate novel gene models found in D. melanogaster, identify genes differentially expressed between the sexes and sex-specific alternative splicing events, and examine the evolution of gene expression.
 
Overall design Comparison of expresssion profiles in female and male whole flies. These are the same samples used to generate the array data found in GSE6640.
 
Contributor(s) Malone JH, Artieri CG, Sturgill D, Zhang Y, Oliver B
Citation(s) 21179090
BioProject PRJNA200701
Submission date Mar 21, 2011
Last update date May 15, 2019
Contact name Brian Oliver
E-mail(s) briano@nih.gov
Phone 301-204-9463
Organization name NIDDK, NIH
Department LBG
Lab Developmental Genomics
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (14)
GPL9061 Illumina Genome Analyzer II (Drosophila melanogaster)
GPL9958 Illumina Genome Analyzer II (Drosophila pseudoobscura)
GPL10061 Illumina Genome Analyzer II (Drosophila yakuba)
Samples (32)
GSM694258 Whole_Dmel_yw_Female_Rep1
GSM694259 Whole_Dmel_yw_Female_Rep2
GSM694260 Whole_Dmel_yw_Male_Rep1
This SubSeries is part of SuperSeries:
GSE44612 Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models
Relations
SRA SRP006203

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28078_RAW.tar 55.2 Gb (http)(custom) TAR (of BAM, RPKM, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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