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Series GSE29028 Query DataSets for GSE29028
Status Public on May 03, 2011
Title Mechanisms of urokinase plasminogen activator (uPA)-mediated atherosclerosis
Organism Mus musculus
Experiment type Expression profiling by array
Summary Data from clinical studies, cell culture, and animal models implicate the urokinase (uPA)/Plasminogen (Plg) system in the development of atherosclerosis and aneurysms. However, the mechanisms through which uPA/Plg stimulate these diseases are not yet defined. We used genetically modified, atherosclerosis-prone mice, including mice with macrophage-specific uPA overexpression to clarify mechanisms of uPA/Plg-accelerated atherosclerosis and aneurysm formation. Microarray studies were performed to identify potential mediators of uPA-accelerated atherosclerosis. These studies identified S100A8 and S100A9 mRNA as the most highly upregulated transcripts in uPA-overexpressing macrophages; upregulation of S100A9 protein in uPA-overexpressing macrophages was confirmed by Western blotting. S100A8/A9, which are atherogenic in mice and are expressed in human atherosclerotic plaques, are also upregulated in aortae of mice with uPA-overexpressing macrophages, and macrophage S100A9 mRNA is upregulated by exposure of wild-type macrophages to medium from uPA-overexpressing macrophages. Bioinformatics analysis of the microarray data suggest significant effects of uPA overexpression on cell migration and cell-matrix interactions. Our results confirm—in a second animal model—that macrophage-expressed uPA stimulates atherosclerosis and aortic dilation. They also implicate specific pathways in uPA/Plg-accelerated atherosclerosis and aneurysmal disease.
 
Overall design Six independent biological replicate RNA samples were prepared from thioglycollate-elicited peritoneal macrophages from mice of two different genotypes: SR-uPA+/0 transgenic (overexpress uPA in macrophages) and nontransgenic, respectively), for a total of 12 independent RNA samples. Both transgenic and nontransgenic mice were Apoe-/- and were fed Western diet from 5-15 weeks before peritoneal macrophages were elicited. In addition, from the six samples of each genotype, a pooled sample was prepared by combining the six genotype-specific samples. Each of the two pooled samples was assayed on the BeadChip in two technical replicates, for a total of 16 hybridizations performed using two Illumina Mouse Ref-8 v1.1 chips.
 
Contributor(s) Farris SD, Hu JH, Krishnan R, Emery I, Chu T, Du L, Kremen M, Dichek HL, Gold ES, Ramsey SA, Dichek DA, Amon L
Citation(s) 21536666
Submission date May 03, 2011
Last update date Mar 25, 2019
Contact name Jie Hong Hu
E-mail(s) jhhu@u.washington.edu
Phone 206-616-4232
Fax 206-221-6346
Organization name University of Washington
Department Medicine
Lab David Dichek
Street address 1959 NE Pacific St, HSB K-127
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platforms (1)
GPL7868 VUmc/Illumina Sentrix MouseRef8 v1.1
Samples (16)
GSM719199 SRmix1
GSM719200 SR109
GSM719201 SR111
Relations
BioProject PRJNA140485

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29028_non-normalized_data.txt.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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