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Status |
Public on May 10, 2011 |
Title |
Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle |
Organism |
Glycine max |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
We report the genome-wide transcriptome of soybean seeds across several stages of seed development and the entire life cycle using Illumina high-throughput sequencing technology. Specifically, we profiled whole seeds containing globular-stage, heart-stage, cotyledon-stage, early maturation-stage, mid-maturation-stage, and late-maturation-stage embryos. We also profiled dry soybean seeds, and vegetative and reproductive tissues including leaves, roots, stems, seedlings, and floral buds.
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Overall design |
IIllumina sequencing of transcripts from whole seeds at five stages of seed development (globular, heart, cotyledon, early-maturation, mid-maturation, late-maturation, dry), and vegetative (leaves, roots, stems, seedlings) and reproductive (floral buds) tissues.
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Contributor(s) |
Goldberg RB, Le BH, Henry KF, Bui AQ, Wu X, Chen M |
Citation(s) |
25963149, 29078418 |
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Submission date |
May 09, 2011 |
Last update date |
Jul 19, 2019 |
Contact name |
Bob Goldberg |
E-mail(s) |
bobglab@mcdb.ucla.edu
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Phone |
310-825-3270
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Organization name |
University of California, Los Angeles
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Department |
Molecular, Cell and Developmental Biology
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Street address |
610 Charles E Young Drive East
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City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095 |
Country |
USA |
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Platforms (1) |
GPL15008 |
Illumina HiSeq 2000 (Glycine max) |
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Samples (12)
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Relations |
SRA |
SRP006767 |
BioProject |
PRJNA140081 |
Supplementary file |
Size |
Download |
File type/resource |
GSE29163_RAW.tar |
3.1 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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