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Series GSE29240 Query DataSets for GSE29240
Status Public on Jan 01, 2016
Title Yersinia pestis uses AHL-based quorum sensing to regulate metabolic functions likely to be important for flea colonization
Platform organism Yersinia pestis CO92
Sample organism Yersinia pestis
Experiment type Expression profiling by array
Summary The etiologic agent of bubonic plague, Yersinia pestis, senses cell density-dependent chemical signals to synchronize transcription between cells of the population in a process named quorum sensing. Though the closely related enteric pathogen Y. pseudotuberculosis uses quorum sensing system to regulate motility, the role of quorum sensing in Y. pestis has been unclear. In this study we performed transcriptional profiling experiments to identify Y. pestis quorum sensing regulated functions. Our analysis revealed that acyl-homoserine lactone based quorum sensing controls the expression of several metabolic functions. Maltose fermentation and the glyoxylate bypass are induced by acyl-homoserine lactone signaling. This effect was seen to be temperature conditional. Metabolism is unresponsive to quorum sensing regulation at mammalian body temperature, indicating a potential role for quorum sensing regulation of metabolism specifically during colonization of the flea vector. It is proposed that utilization of alternative carbon sources may enhance growth and/or survival during prolonged flea colonization, contributing to maintenance of plague in nature.
 
Overall design Six independent RNA samples from Y. pestis CO92 R114 AHL deficient cultures were paired with six independent RNA samples from control Y. pestis CO92 R88 cultures for hybridization to six two-color microarrays. For three arrays, the control RNA sample was labeled with Alexa 555 dye and the experimental RNA sample was labeled with Alexa 647 dye; the dyes were reversed for the other three arrays to account for any dye bias.
 
Contributor(s) Minion C, Yu J
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Submission date May 11, 2011
Last update date Jan 01, 2016
Contact name Chris Minion
E-mail(s) fcminion@iastate.edu
Phone 515-294-6347
Fax 515-294-8500
Organization name Iowa State University
Department VMPM
Street address 1130 Vet Med
City Ames
State/province IA
ZIP/Postal code 50011
Country USA
 
Platforms (1)
GPL9009 JCVI PFGRC Yersinia pestis 18K v5 array designed primarily based on strain CO92
Samples (6)
GSM723034 Δpgm vs. Δpgm ΔypeIR ΔyspIR rep1
GSM723035 Δpgm vs. Δpgm ΔypeIR ΔyspIR rep2
GSM723036 Δpgm vs. Δpgm ΔypeIR ΔyspIR rep3
This SubSeries is part of SuperSeries:
GSE30373 Global gene expression analysis of *Yersinia pestis* AHL quorum sensing
Relations
BioProject PRJNA153977

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29240_RAW.tar 2.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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