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| Status |
Public on Jul 30, 2012 |
| Title |
Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Rice Nongken 58S between Short Day and Long Day Condition |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
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| Summary |
Nongken 58S is photoperiod-sensitive genic male sterile (PGMS) rice. Its pollens are fully sterile when it is treated with LD condition from glume primordium differentiation stage to pistil/stamen primordium forming stage, and its pollens are fertile when treated with SD condition during these stages.
We used microarrays to detail the global programme of leaf gene expression under LD and SD condition for investigating the transcriptomes in the male sterility transition in PGMS rice to find out the genes related to this transition
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| Overall design |
We compared the transcriptomes of Nongken 58S under shortday (SD) and longday (LD) at the glume primordium differentiation stage and pistil/stamen primordium forming stage, respectively. 12 samples were analyzed, and each treatment had biological triplicates.
Supplementary files: SD vs LD during the glume primordium differentiation stage and the pistil/stamen primordium forming stage.
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| Contributor(s) |
Wang W, Liu Z, Guo Z, Song G, Chen Q, Jiang D, Zhu Y, Yang D |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jun 08, 2011 |
| Last update date |
Dec 27, 2017 |
| Contact name |
Wei Wang |
| E-mail(s) |
rego_wang@whu.edu.cn
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| Organization name |
Wuhan Universtiy
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| Street address |
Bayi Road
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| City |
wuhan |
| ZIP/Postal code |
430072 |
| Country |
China |
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| Platforms (1) |
| GPL2025 |
[Rice] Affymetrix Rice Genome Array |
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| Samples (12)
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| GSM739028 |
rice leaves under LD condition, biological rep 1 (1P-SLD) |
| GSM739029 |
rice leaves under SD condition, biological rep 1 (1P-SSD) |
| GSM739030 |
rice leaves under LD condition, biological rep 1 (1G-SLD) |
| GSM739031 |
rice leaves under SD condition, biological rep 1 (1G-SSD) |
| GSM739032 |
rice leaves under LD condition, biological rep 2 (2P-SLD) |
| GSM739033 |
rice leaves under SD condition, biological rep 2 (2P-SSD) |
| GSM739034 |
rice leaves under LD condition, biological rep 2 (2G-SLD) |
| GSM739035 |
rice leaves under SD condition, biological rep 2 (2G-SSD) |
| GSM739036 |
rice leaves under LD condition, biological rep 3 (3P-SLD) |
| GSM739037 |
rice leaves under SD condition, biological rep3 (3P-SSD) |
| GSM739038 |
rice leaves under LD condition, biological rep 3 (3G-SLD) |
| GSM739039 |
rice leaves under SD condition, biological rep 3 (3G-SSD) |
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| Relations |
| BioProject |
PRJNA140943 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE29820_G-SSD_vs_G-SLD.txt.gz |
6.0 Kb |
(ftp)(http) |
TXT |
| GSE29820_P-SSD_vs_P-SLD.txt.gz |
11.0 Kb |
(ftp)(http) |
TXT |
| GSE29820_RAW.tar |
54.6 Mb |
(http)(custom) |
TAR (of CEL, CHP) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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