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Series GSE30115 Query DataSets for GSE30115
Status Public on Nov 23, 2011
Title σB-dependent yabJ-spoVG operon involved in regulation of extracellular nuclease, lipase and protease expression in Staphylococcus aureus
Platform organisms Staphylococcus aureus; Staphylococcus aureus subsp. aureus NCTC 8325; Staphylococcus aureus subsp. aureus COL; Staphylococcus aureus subsp. aureus Mu50; Staphylococcus aureus subsp. aureus N315; Staphylococcus aureus subsp. aureus MW2; Staphylococcus aureus subsp. aureus MRSA252; Staphylococcus aureus subsp. aureus MSSA476; Staphylococcus aureus subsp. aureus USA300
Sample organism Staphylococcus aureus
Experiment type Expression profiling by array
Summary The alternative sigma factor σB of Staphylococcus aureus is involved in the coordination of the general stress response, expression of virulence determinants and modulation of antibiotic resistance levels. It controls a large regulon, either directly by recognizing conserved σB promoter sequences, or indirectly via σB-dependent elements. The σB-controlled yabJ-spoVG operon encodes two such putative downstream elements. We report here transcriptome analysis in S. aureus Newman showing that inactivation of the yabJ-spoVG operon had primarily a repressing effect on a small subregulon comprising mainly virulence factors, including a nuclease (nuc), a protease (splE) and a lipase (lip).. As a consequence extracellular nuclease, protease and lipase activities were reduced in a yabJspoVG mutant. Trans-complementation by SpoVG was sufficient to restore their reduced phenotypic expression and lowered transcription due to yabJ-spoVG deletion. It did not restore, however, the changes triggered by σB inactivation, indicating that both regulons do only partially overlap, despite the σB dependency of the yabJ-spoVG expression. Thus, σB is likely to control additional, SpoVG-independent factors affecting the expression of numerous hydrolytic enzymes. SpoVG, on the other hand, seems to fine-tune the σB-dependent regulation of a subset of virulence factors by antagonizing the σB effect.
 
Overall design Newman wild type strain compared to double mutant spoVG and yabJ or to sigB truncated mutant
 
Contributor(s) Schulthess B, Bloes DA, François P, Girard M, Schrenzel J, Bischoff M, Berger-Bächi B
Citation(s) 21725011
Submission date Jun 20, 2011
Last update date Mar 23, 2012
Contact name FRANCOIS Patrice
E-mail(s) patrice.francois@genomic.ch
Phone +41 (0)22 372 93 37
Organization name Genomic Research Laboratory
Department Service of Infectious Diseases
Lab Genomic Research Lab
Street address Rue Gabrielle-Perret-Gentil, 4
City Geneva
State/province Ge 4
ZIP/Postal code 1211
Country Switzerland
 
Platforms (1)
GPL7137 Agilent-017903 Staphylococcus aureus V5 Bis 15K (basic)
Samples (9)
GSM745619 Wild type strain Newman replicate 1
GSM745620 Wild type strain Newman replicate 2
GSM745621 Wild type strain Newman replicate 3
Relations
BioProject PRJNA144047

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30115_RAW.tar 14.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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