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Status |
Public on Jul 09, 2011 |
Title |
Genome wide mapping for TF binding sites for Pol II, JunD, cFos, Max & cMyc in GM12878 (ENCODE Project) |
Project |
ENCODE
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Organism |
Homo sapiens |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
We performed ChIP-Seq for 5 different transcription factors (Pol II, JunD, cFos, Max and cMyc) as part of the ENCODE project in order to determine sites of allele-specific binding. This was done in the GM12878 cell line which was genotyped as part of the pilot II phase of the 1000 genomes project. There is a matching RNA-Seq experiemnt performed on the same cell line.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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Overall design |
Mapping TF binding sites for 5 different TFs to assess allele-specific binding
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Web link |
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
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Contributor(s) |
Rozowsky J, Raha D, Snyder M, Gerstein M |
Citation(s) |
21811232 |
BioProject |
PRJNA63447 |
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Submission date |
Jul 05, 2011 |
Last update date |
May 15, 2019 |
Contact name |
Joel Rozowsky |
E-mail(s) |
rozowsky@csb.yale.edu
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Phone |
203-432-5405
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Organization name |
Yale University
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Department |
Molecular Biophysics & Biochemistry
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Lab |
Gerstein Lab
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Street address |
266 Whitney Ave, Bass 437
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City |
New Haven |
State/province |
CT |
ZIP/Postal code |
06520 |
Country |
USA |
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Platforms (1) |
GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
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Samples (5)
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This SubSeries is part of SuperSeries: |
GSE30401 |
AlleleSeq: Analysis of Allele-Specific Expression and Binding in a Network Framework |
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Relations |
SRA |
SRP007418 |