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Series GSE30454 Query DataSets for GSE30454
Status Public on Nov 22, 2011
Title Colorectal cancers with microsatellite instability display unique miRNA profiles
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary Analysis of microRNA expression of tumoral and non-tumoral colonic tissues. The aim of this study was to analyze the global miRNA signatures in various groups of well-characterized CRCs based on the presence of microsatellite instability (MSI).
 
Overall design Total RNA from formalin-fixed paraffin-embedded tissue blocks from 4 different groups (normal colonic mucosa, Lynch syndrome tumors, sporadic MSI tumors and MSS tumors) was isolated using the RecoverAll Total Nucleic Acid Isolation Kit (Ambion) according to manufacturer instructions. MiRNA expression profiles were analyzed using miRNA microarray platform.
 
Contributor(s) Balaguer F, Moreira L, Lozano JJ, Link A, Ramirez G, Shen Y, Cuatrecasas M, Arnold M, Meltzer SJ, Syngal S, Stoffel E, Jover R, Llor X, Castells A, Boland CR, Gironella M, Goel A
Citation(s) 21844009
Submission date Jul 06, 2011
Last update date Feb 18, 2019
Contact name Juanjo Lozano
E-mail(s) juanjo.lozano@ciberehd.org
Organization name CIBEREHD
Department Plataforma de Bioinformatica
Street address C/ Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platforms (1)
GPL8179 Illumina Human v2 MicroRNA expression beadchip
Samples (74)
GSM755304 1N
GSM755305 2N
GSM755306 3N
Relations
BioProject PRJNA143541

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30454_RAW.tar 70.0 Kb (http)(custom) TAR
GSE30454_non-normalized_data.txt.gz 455.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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