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Series GSE30511 Query DataSets for GSE30511
Status Public on Jul 18, 2011
Title Allele specific mRNA-seq expression profiling in Arabidopsis thaliana Col and Ler reciprocal F1 hybrid embryo and endosperm
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary High throughput Illumina sequencing of poly-A selected RNA from Arabidopsis Col and Ler reciprocal F1 hybrid embryo and endosperm tissue isolated at 6-7 days after pollination to identify imprinted genes.
 
Overall design Examination of parent-of-origin specific and total gene expression in seed tissues.
 
Contributor(s) Gehring M, Henikoff S
Citation(s) 21858209
Submission date Jul 08, 2011
Last update date May 15, 2019
Contact name Mary Gehring
Organization name Whitehead Institute for Biomedical Research
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platforms (1)
GPL9302 Illumina Genome Analyzer II (Arabidopsis thaliana)
Samples (4)
GSM756821 Col x Ler embryo RNA-seq
GSM756822 Col x Ler endosperm RNA-seq
GSM756823 Ler x Col embryo RNA-seq
Relations
SRA SRP007424
BioProject PRJNA143331

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30511_RAW.tar 2.9 Gb (http)(custom) TAR (of SAM)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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