|
| Status |
Public on Jul 14, 2011 |
| Title |
[E-MTAB-445] Transcription profiling by high throughput sequencing of blackface sheep infected with the gastrointestinal helminth Teladorsagia circumcincta to analyse resistance to infection |
| Organism |
Ovis aries |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Blackface Teladorsagia Solexa
Analysis of resistance to Teladosagia
ArrayExpress Release Date: 2010-12-08
Publication Author List: Pemberton, J.; Beraldi, D.; Craig, B. and Hopkins, J.
Publication Title: Digital gene expression analysis of gastrointestinal helminth resistance in Scottish blackface lambs
Publication Author List: Sylvain Aubry, Mali Salmon, Kim M Rutherford, Paul Bertone, Andrea Brautigam, Andreas PM Weber, Krystyna A Kelly, Julian M Hibberd
Publication Title: De novo transcriptome assembly enables quantitative expression analysis in non-sequenced model organisms
Person Roles: submitter
Person Last Name: Hopkins
Person First Name: John
Person Mid Initials:
Person Email: john.hopkins@ed.ac.uk
Person Phone: 44 131 650 6160
Person Address: Roslin Institute, Summerhall, Edinburgh. EH9 1QH. UK
Person Affiliation: University of Edinburgh
|
| |
|
| Overall design |
Experimental Design: growth_condition_design
Experimental Design: co-expression_design
Experimental Factor Name: CLINICALINFORMATION
Experimental Factor Name: GROWTHCONDITION
Experimental Factor Type: clinical_information
Experimental Factor Type: growth_condition
|
| |
|
| Citation(s) |
21324010 |
| |
| Submission date |
Jul 12, 2011 |
| Last update date |
May 15, 2019 |
| Organization |
European Bioinformatics Institute |
| E-mail(s) |
miamexpress@ebi.ac.uk
|
| Lab |
ArrayExpress
|
| Street address |
Wellcome Trust Genome Campus
|
| City |
Hinxton |
| State/province |
Cambridgeshire |
| ZIP/Postal code |
CB10 1SD |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
| GPL13891 |
Illumina Genome Analyzer II (Ovis aries) |
|
| Samples (15)
|
| GSM759448 |
[E-MTAB-445] T. circumcincta infected Gastric LN_20 |
| GSM759449 |
[E-MTAB-445] T. circumcincta infected Gastric LN_21 |
| GSM759450 |
[E-MTAB-445] T. circumcincta infected Gastric LN_38 |
| GSM759451 |
[E-MTAB-445] uninfected control Gastric LN_47 |
| GSM759452 |
[E-MTAB-445] T. circumcincta infected Gastric LN_50 |
| GSM759453 |
[E-MTAB-445] uninfected control Gastric LN_57 |
| GSM759454 |
[E-MTAB-445] T. circumcincta infected Gastric LN_58 |
| GSM759455 |
[E-MTAB-445] T. circumcincta infected Gastric LN_92 |
| GSM759456 |
[E-MTAB-445] T. circumcincta infected Gastric LN_109 |
| GSM759457 |
[E-MTAB-445] T. circumcincta infected Gastric LN_114 |
| GSM759458 |
[E-MTAB-445] uninfected control Gastric LN_124 |
| GSM759459 |
[E-MTAB-445] uninfected control Gastric LN_130 |
| GSM759460 |
[E-MTAB-445] uninfected control Gastric LN_146 |
| GSM759461 |
[E-MTAB-445] T. circumcincta infected Gastric LN_173 |
| GSM759462 |
[E-MTAB-445] T. circumcincta infected Gastric LN_183 |
|
| Relations |
| SRA |
ERP000402 |
| ArrayExpress |
E-MTAB-445 |
| BioProject |
PRJNA144507 |
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