|
| Status |
Public on Jul 14, 2011 |
| Title |
[E-MTAB-460] Sanger_zebrafish_sequencing |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Abstract: Paired-end sequence data has been generated using polyA selected RNA from a range of zebrafish tissues using the Illumina Genome Analyzer. Study description: Zebrafish total RNA was extracted from adult tissue, then polyA selected. After fragmentation and reverse transcription Illumina sequencing libraries were prepared. Paired-end sequence runs were performed with 76 base reads on the Illumina Genome Analyzer.
ArrayExpress Release Date: 2011-01-28
Person Roles: submitter
Person Last Name: Service
Person First Name: Submission
Person Mid Initials:
Person Email: datahose@sanger.ac.uk
Person Phone:
Person Address: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom
Person Affiliation: Wellcome Trust Sanger Institute
|
| |
|
| Overall design |
Experimental Design: development_or_differentiation_design
Experimental Design: organism_part_comparison_design
Experimental Factor Name: ORGANISM_PART
Experimental Factor Type: organism_part
|
| |
|
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jul 12, 2011 |
| Last update date |
May 15, 2019 |
| Organization |
European Bioinformatics Institute |
| E-mail(s) |
miamexpress@ebi.ac.uk
|
| Lab |
ArrayExpress
|
| Street address |
Wellcome Trust Genome Campus
|
| City |
Hinxton |
| State/province |
Cambridgeshire |
| ZIP/Postal code |
CB10 1SD |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
| GPL9319 |
Illumina Genome Analyzer II (Danio rerio) |
|
| Samples (12)
|
| GSM759475 |
[E-MTAB-460] Zebrafish adult brain, 3212_6 |
| GSM759476 |
[E-MTAB-460] Zebrafish adult brain, 3537_7 |
| GSM759477 |
[E-MTAB-460] Zebrafish adult heart, 3212_7 |
| GSM759478 |
[E-MTAB-460] Zebrafish adult heart, 4191_7 |
| GSM759479 |
[E-MTAB-460] Zebrafish adult head kidney, 3212_8 |
| GSM759480 |
[E-MTAB-460] Zebrafish adult head kidney, 4191_6 |
| GSM759481 |
[E-MTAB-460] Zebrafish adult swim bladder, 3212_5 |
| GSM759482 |
[E-MTAB-460] Zebrafish adult swim bladder, 4191_5 |
| GSM759483 |
[E-MTAB-460] Zebrafish adult brain, 5625_1 |
| GSM759484 |
[E-MTAB-460] Zebrafish adult heart, 5625_2 |
| GSM759485 |
[E-MTAB-460] Zebrafish adult head kidney, 5625_3 |
| GSM759486 |
[E-MTAB-460] Zebrafish adult swim bladder, 5625_5 |
|
| Relations |
| SRA |
ERP000447 |
| ArrayExpress |
E-MTAB-460 |
| BioProject |
PRJNA144511 |
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