|
| Status |
Public on Jul 14, 2011 |
| Title |
[E-MTAB-475] Trypanosoma vivax Y486 bloodstream stage RNAseq |
| Organism |
Trypanosoma vivax |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Trypanosoma vivax is a vector-borne blood parasite of cattle throughout sub-saharan Africa. For some years the genome sequence of this organism has been in development at the Wellcome Trust Sanger Institute and is shortly to be completed. Analysis of the genome has revealed various putative genes encoding unknown proteins. In an effort to validate these features we will sequence mRNA transcripts from the bloodstream stage of the genome strain Y486. Most of the novel gene families identified from the genome sequence are too diverse to be validated individually, i.e. through RT-PCR, so it is necessary to sequence all cellular transcripts. We hope to confirm the transcription of one or all members of the novel gene families from the resulting transcriptome. While essential for the scientific rigour of the present genome project, this transcriptome will also provide an additional resource for the longer-term benefit of the research community.
ArrayExpress Release Date: 2011-02-16
Person Roles: submitter
Person Last Name: Quan
Person First Name: Lin
Person Mid Initials:
Person Email: ql3@sanger.ac.uk
Person Phone: 01223 834244
Person Address: Wellcome Trust Genome Campus,Hinxton,Cambridge. CB10 1SA UK
Person Affiliation: Wellcome Trust Sanger Institute
Person Roles: Investigator
Person Last Name: Jackson
Person First Name: Andrew
Person Mid Initials: P
Person Email: aj4@sanger.ac.uk
Person Phone: 01223 834244
Person Address: Wellcome Trust Genome Campus,Hinxton,Cambridge. CB10 1SA UK
Person Affiliation: Wellcome Trust Sanger Institute
Person Roles: Project Coordinator
Person Last Name: Sanders
Person First Name: Mandy
Person Mid Initials: J
Person Email: mjs@sanger.ac.uk
Person Phone: 01223 834244
Person Address: Wellcome Trust Genome Campus,Hinxton,Cambridge. CB10 1SA UK
Person Affiliation: Wellcome Trust Sanger Institute
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| Overall design |
Experimental Design: genotype_design
Experimental Design: in_vivo_design
Experimental Design: is_expressed_design
Experimental Design: transcript_identification_design
Experimental Factor Name: StrainOrLine
Experimental Factor Type: StrainOrLine
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| Citation missing |
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| |
| Submission date |
Jul 12, 2011 |
| Last update date |
May 15, 2019 |
| Organization |
European Bioinformatics Institute |
| E-mail(s) |
miamexpress@ebi.ac.uk
|
| Lab |
ArrayExpress
|
| Street address |
Wellcome Trust Genome Campus
|
| City |
Hinxton |
| State/province |
Cambridgeshire |
| ZIP/Postal code |
CB10 1SD |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
| GPL13893 |
Illumina Genome Analyzer II (Trypanosoma vivax) |
|
| Samples (1) |
| GSM759487 |
[E-MTAB-475] Trypanosoma vivax Y486 RNA |
|
| Relations |
| SRA |
ERP000496 |
| ArrayExpress |
E-MTAB-475 |
| BioProject |
PRJNA144513 |
