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Series GSE33023 Query DataSets for GSE33023
Status Public on Apr 25, 2012
Title mRNA-seq of L1 larvae recovering from arrest
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Summary We used RNA-seq to sequence the transcriptome of worms arrested in the first larval stage after hatching without food and starved for 12 hours, then a timecourse of animals recovering from arrest after feeding. We collected samples after 12 hours of starvation and 1, 3 and 6 hours after feeding.
Overall design Four time points (12 hr starvation and 1, 3, and 6 hr of recovery) with three biological replicates at times 0 and 6 and two biological replicates at times 1 and 3.
Contributor(s) Maxwell CS, Baugh LR
Citation(s) 22539650
Submission date Oct 17, 2011
Last update date May 15, 2019
Contact name Colin Maxwell
Organization name Duke
Department Biology
Lab Baugh
Street address 4314 FFSC
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
Platforms (1)
GPL14752 AB SOLiD 4 System (Caenorhabditis elegans)
Samples (10)
GSM818544 3hr_Recovery BC1
GSM818545 12hr_Starved BC2
GSM818546 1hr_Recovery BC3
SRA SRP008969
BioProject PRJNA148023

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33023_GFF_for_DEXSeq.gtf.gz 1.6 Mb (ftp)(http) GTF
GSE33023_GFF_for_cuffdiff.gtf.gz 3.3 Mb (ftp)(http) GTF
GSE33023_RAW.tar 11.0 Gb (http)(custom) TAR (of BAM, TXT)
GSE33023_README.txt 2.2 Kb (ftp)(http) TXT
GSE33023_genes.fpkm_tracking.txt.gz 1.6 Mb (ftp)(http) TXT
GSE33023_isoforms.fpkm_tracking.txt.gz 2.1 Mb (ftp)(http) TXT 19.3 Mb (ftp)(http) BW 19.9 Mb (ftp)(http) BW 16.0 Mb (ftp)(http) BW 16.5 Mb (ftp)(http) BW 13.9 Mb (ftp)(http) BW 14.4 Mb (ftp)(http) BW 15.1 Mb (ftp)(http) BW 15.6 Mb (ftp)(http) BW
GSE33023_transSpliced__plus.bedgraph.gz 81.9 Kb (ftp)(http) BEDGRAPH
GSE33023_transSpliced_minus.bedgraph.gz 80.1 Kb (ftp)(http) BEDGRAPH
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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