NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE33593 Query DataSets for GSE33593
Status Public on Jun 03, 2012
Title Streptomyces coelicolor A3(2) SigR regulon
Organism Streptomyces coelicolor A3(2)
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary We determined the genomic locations of the SigR binding sites by chromatin immuno-precipitation of cross-linked DNA and hybridization on a tilling oligonucleotide array after 20 minutes of diamide treatment on cell cultures.
 
Overall design Three independent biological samples were prepared separately from the wild-type cells and pooled before hybridization on a single array. Three more independent biological samples were prepared from sigR deletion mutant cells, pooled, and hybridized on another single array. After normalization, the signal from the mutant cells was subtracted from the signal from the wild-type cells to recover SigR specific signal.
 
Contributor(s) Dufour YS, Kim M, Yoo J, Cho Y, Park J, Nam G, Kim H, Donohue T, Roe J
Citation(s) 22651816
Submission date Nov 09, 2011
Last update date Jun 05, 2012
Contact name Yann S Dufour
Organization name University of Wisconsin - Madison
Department Bacteriology
Lab Timothy Donohue
Street address 1550 Linden Drive
City Madison
State/province WI
ZIP/Postal code 53706
Country USA
 
Platforms (1)
GPL14825 UWMadison/Donohue Streptomyces coelicolor A3(2) 385K_v1.0
Samples (1)
GSM828761 SigR_diamide_20min
Relations
BioProject PRJNA148535

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33593_RAW.tar 43.7 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.