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| Status |
Public on Nov 30, 2011 |
| Title |
Comparative expression profile of Porphyromonas gingivalis parent strain W83 and the HU protein (PG0121) mutant during exponential growth in rich medium. |
| Organism |
Porphyromonas gingivalis |
| Experiment type |
Expression profiling by array
|
| Summary |
HU protein regulates expression of genes involved in cell-division, iron acquisition, and transcriptional regulation in Porphyromonas gingivalis
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| Overall design |
Analysis involved RNA extracted from the parent strain W83 and the PG0121 (HU protein) mutant during exponential growth in rich medium. Each of the four experiments used a different preparation of RNA. Comparative expression profiles were determined by hybridizing the microarray slide with a mixture containing equal amount of cDNA generated from each strain. Dye swap experiments were performed.
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| Contributor(s) |
Cugini C, Priyadarshini R, Arndt A, Davey ME |
| Citation(s) |
23175503 |
| Submission date |
Nov 29, 2011 |
| Last update date |
Mar 04, 2013 |
| Contact name |
Mary Ellen Davey |
| E-mail(s) |
mdavey@forsyth.org
|
| Phone |
6178928513
|
| Fax |
6172624021
|
| Organization name |
The Forsyth Institute
|
| Department |
Molecular Genetics
|
| Lab |
Davey
|
| Street address |
245 First Street
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL4309 |
JCVI PFGRC Porphyromonas gingivalis 10K v2 array designed primarily based on strain W83 |
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| Samples (1) |
| GSM840449 |
HU (PG0121) mutant relative to P. gingivalis WT mid-exponential |
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| Relations |
| BioProject |
PRJNA150591 |
