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Series GSE34028 Query DataSets for GSE34028
Status Public on Apr 03, 2012
Title BW25113 H202 and delta rpoS persister cells vs. stationary phase BW25113 wild-type
Organism Escherichia coli
Experiment type Expression profiling by array
Summary E. coli K-12 BW25113 persister cells generated via H202 pre-treatment and deletion of rpoS, relative to BW25113 wild-type stationary phase gene expression. Persister cells were generated following exposure to ampicillin 20 ug/mL.
Overall design Strains: BW25113 wild-type, pre-treated with H202 10 min, ampicillin 5 h; BW25113 delta rpoS, ampicillin 5 h; BW25113 wild-type OD at 600 nm of 3.0, ampicillin 30 mins.
Medium: LB
ampicillin 20 ug/mL used to generate persisters; ampicillin 5 ug/mL added to stationary phase BW25113 wild-type
Contributor(s) O'Connor HF, Benedik M, Wood TK
Citation(s) 22221537
Submission date Nov 29, 2011
Last update date Mar 08, 2019
Contact name Thomas K. Wood
Phone 814-863-4811
Organization name Pennsylvania State University
Department Chemical Engineering & Biochemistry and Molecular Biology
Lab Dr. Wood's Lab
Street address Room 161 Fenske Laboratory, University Park
City State College
State/province PA
ZIP/Postal code 16802
Country USA
Platforms (1)
GPL3154 [E_coli_2] Affymetrix E. coli Genome 2.0 Array
Samples (3)
GSM840577 BW25113 delta rpoS persisters T5 hrs ampicillin
GSM840609 BW25113 wild-type H202 pre-treatment 5 h ampicillin persisters
GSM840625 BW25113 wild-type stationary phase OD 3.0
BioProject PRJNA148071

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34028_RAW.tar 3.4 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

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