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Series GSE3550 Query DataSets for GSE3550
Status Public on Nov 04, 2005
Title ENCODE ChIP-chip for BAF170 on Human Hela S3 Cells
Project Pilot ENCODE
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary BAF170 ChIP-chip performed on Human Hela S3 Cells for Nimblegen ENCODE arrays which comprise 50mer oligonucleotides spaced every 38bps (overlapping by 12nts). Goal is to identify binding sites for BAF170.
Keywords = Transcription Factor Binding, BAF170, ChIP-chip, Human, Genome Tiling Arrays
Keywords: ChIP-chip
 
Overall design DNA from immunoprecipitated chromatin or total genomic DNA was hybridized to a Nimblegen ENCODE tiling array containing overlapping 50 nt oligonucleotide probes. Samples are four biological replicates.
Web link http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
 
Contributor(s) Bruce C, Euskirchen G, Zhang Z, Rozowsky JS, Gerstein MB, Snyder MP
Citation(s) 17571346
BioProject PRJNA63421
Submission date Nov 02, 2005
Last update date Sep 14, 2012
Contact name Can Bruce
E-mail(s) can.bruce@sciomix.com
Organization name Sciomix
Street address 5 Chestnut Lane
City Woodbridge
State/province CT
ZIP/Postal code 06525
Country USA
 
Platforms (1)
GPL2131 Nimblegen ENCODE Array
Samples (4)
GSM81500 ENCODE ChIP-chip for BAF170 on Human Hela S3 Cells Sample 1 (unpublished)
GSM81501 ENCODE ChIP-chip for BAF170 on Human Hela S3 Cells Sample 2 (unpublished)
GSM81502 ENCODE ChIP-chip for BAF170 on Human Hela S3 Cells Sample 3 (unpublished)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE3550_RAW.tar 35.7 Mb (http)(custom) TAR (of GFF)

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