|
Status |
Public on Nov 04, 2005 |
Title |
ENCODE ChIP-chip for BAF170 on Human Hela S3 Cells |
Project |
Pilot ENCODE
|
Organism |
Homo sapiens |
Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
Summary |
BAF170 ChIP-chip performed on Human Hela S3 Cells for Nimblegen ENCODE arrays which comprise 50mer oligonucleotides spaced every 38bps (overlapping by 12nts). Goal is to identify binding sites for BAF170. Keywords = Transcription Factor Binding, BAF170, ChIP-chip, Human, Genome Tiling Arrays Keywords: ChIP-chip
|
|
|
Overall design |
DNA from immunoprecipitated chromatin or total genomic DNA was hybridized to a Nimblegen ENCODE tiling array containing overlapping 50 nt oligonucleotide probes. Samples are four biological replicates.
|
Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
|
|
|
Contributor(s) |
Bruce C, Euskirchen G, Zhang Z, Rozowsky JS, Gerstein MB, Snyder MP |
Citation(s) |
17571346 |
BioProject |
PRJNA63421 |
|
Submission date |
Nov 02, 2005 |
Last update date |
Sep 14, 2012 |
Contact name |
Can Bruce |
E-mail(s) |
can.bruce@sciomix.com
|
Organization name |
Sciomix
|
Street address |
5 Chestnut Lane
|
City |
Woodbridge |
State/province |
CT |
ZIP/Postal code |
06525 |
Country |
USA |
|
|
Platforms (1) |
|
Samples (4)
|
GSM81500 |
ENCODE ChIP-chip for BAF170 on Human Hela S3 Cells Sample 1 (unpublished) |
GSM81501 |
ENCODE ChIP-chip for BAF170 on Human Hela S3 Cells Sample 2 (unpublished) |
GSM81502 |
ENCODE ChIP-chip for BAF170 on Human Hela S3 Cells Sample 3 (unpublished) |
GSM81503 |
ENCODE ChIP-chip for BAF170 on Human Hela S3 Cells Sample 4 (unpublished) |
|