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| Status |
Public on Feb 25, 2012 |
| Title |
Identification of Conserved and Novel MicroRNAs in Cashmere Goat (Capra hircus) by Deep Sequencing |
| Organism |
Capra hircus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
The study confirmed a batch of goat skin and hair follicles miRNA, by high-throughput sequencing methods.316 sequences miRNAs were obtained by the means of analysis and we confirmed the authenticity of 68 known miRNAs and discovered 248 novel miRNAs, as well as 22 miRNAs that haven’t been reported before. Through the miRNAs family analysis, we found the co-expressed miRNAs in goat and sheep located in the same region of chromosome, which may play an essential role in skin and follicle development. In addition, the prediction of novel target miRNAs followed by the analysis of target gene pathways indicated that MAPK pathway may have an important effect to the fast growth of skin follicle cell.
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| Overall design |
We sequenced a mixed sample which contains three goat skin in anagen of cashmere
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| Contributor(s) |
Zhihong L, Jinquan L, Yanhong Z |
| Citation missing |
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| |
| Submission date |
Feb 23, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Liu Zhihong |
| Organization name |
Inner Mongolia Agriculture University
|
| Street address |
Zhaowuda Road 306
|
| City |
Huhehot |
| ZIP/Postal code |
010018 |
| Country |
China |
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| Platforms (1) |
| GPL15270 |
Illumina Genome Analyzer IIx (Capra hircus) |
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| Samples (1) |
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| Relations |
| SRA |
SRP011050 |
| BioProject |
PRJNA151785 |
