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Series GSE36106 Query DataSets for GSE36106
Status Public on Feb 27, 2012
Title 4-7 Hour ORC ChIP-Seq experiment
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary modENCODE_submission_4192
This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see
Project Goal: We will precisely identify sequence elements that direct DNA replication by using chromatin immunoprecipitation of known replication initiation complexes. These experiments will be conducted in multiple cell types and developmental tissues.
For data usage terms and conditions, please refer to and
Overall design EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Developmental Stage: Embryo 4-7h; Genotype: wild type; EXPERIMENTAL FACTORS: Strain Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); read length (read_length) ; Antibody dORC2 (target is Drosophila ORC2p); Developmental Stage Embryo 4-7h
Web link
Contributor(s) MacAlpine D, MacAlpine H, Eaton M, Prinz J
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63463
Submission date Feb 27, 2012
Last update date May 15, 2019
Contact name DCC modENCODE
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
Platforms (1)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
Samples (4)
GSM881216 4-7hr ORC ChIP-Seq Input Oregon-R strain
GSM881217 4-7hr ORC ChIP-Seq ChIP Oregon-R strain Replicate 1
GSM881218 4-7hr ORC ChIP-Seq ChIP Oregon-R strain Replicate 2
SRA SRP011135

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE36106_4-7h_Embryo_ORC_ChIP-Seq_SDRF.tsv.gz 799 b (ftp)(http) TSV
GSE36106_4-7hr-ORC.bedgraph.gz 18.6 Mb (ftp)(http) BEDGRAPH
GSE36106_RAW.tar 55.3 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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