|
| Status |
Public on Feb 27, 2012 |
| Title |
4-7 Hour ORC ChIP-Seq experiment |
| Project |
modENCODE
|
| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
modENCODE_submission_4192
This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We will precisely identify sequence elements that direct DNA replication by using chromatin immunoprecipitation of known replication initiation complexes. These experiments will be conducted in multiple cell types and developmental tissues.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
|
| |
|
| Overall design |
EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Developmental Stage: Embryo 4-7h; Genotype: wild type; EXPERIMENTAL FACTORS: Strain Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); read length (read_length) ; Antibody dORC2 (target is Drosophila ORC2p); Developmental Stage Embryo 4-7h
|
| Web link |
http://www.modencode.org
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
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| |
|
| Contributor(s) |
MacAlpine D, MacAlpine H, Eaton M, Prinz J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA63463 |
| |
| Submission date |
Feb 27, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
help@modencode.org
|
| Phone |
416-673-8579
|
| Organization name |
Ontario Institute for Cancer Research
|
| Lab |
modENCODE DCC
|
| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
|
| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
| |
|
| Platforms (1) |
| GPL9058 |
Illumina Genome Analyzer (Drosophila melanogaster) |
|
| Samples (4)
|
| GSM881216 |
4-7hr ORC ChIP-Seq Input Oregon-R strain |
| GSM881217 |
4-7hr ORC ChIP-Seq ChIP Oregon-R strain Replicate 1 |
| GSM881218 |
4-7hr ORC ChIP-Seq ChIP Oregon-R strain Replicate 2 |
| GSM881219 |
4-7hr ORC ChIP-Seq ChIP Oregon-R strain Replicate 3 |
|
| Relations |
| SRA |
SRP011135 |
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