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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 28, 2015 |
| Title |
SNP-based LOH of hepatocellular carcinoma (HCC) |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
|
| Summary |
High frequency of loss of heterozygosity (LOH) at locus D4S2964 was found in hepatocellular carcinoma (HCC) by our previous studies and others’. The present study was designed to explore genes around the locus affected by LOH and their clinical implications. 440 SNPs located at 49 genes around D4S2964 were selected from NCBI website for the SNPs microarray fabrication. LOH of these SNPs markers in 112 cases of HCC tissues and paired adjacent liver tissues were investigated by the SNP microarray. A map of LOH of SNPs in genes around D4S2964 was constructed.
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| Overall design |
112 pairs of HCC tissues and corresponding non-tumor tissues was genotyped. LOH and its clinical implication was analyzed.
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| Contributor(s) |
Huang G, Wang H |
| Citation(s) |
22952874 |
| |
| Submission date |
Mar 05, 2012 |
| Last update date |
Sep 19, 2019 |
| Contact name |
Guo-liang Huang |
| E-mail(s) |
huang.glen@gmail.com
|
| Organization name |
Sun Yat-Sen University
|
| Department |
Cancer Center
|
| Lab |
National Key Laboratory of Oncology in South China
|
| Street address |
651 Dongfeng East Road
|
| City |
Guangzhou |
| ZIP/Postal code |
510060 |
| Country |
China |
| |
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| Platforms (1) |
| GPL15305 |
SYSUCC human 440 SNPs around D4S2964 |
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| Samples (224)
|
| GSM885807 |
HCC1003T, tumor tissue |
| GSM885808 |
HCC1004N, non-tumor tissue |
| GSM885809 |
HCC1004T, tumor tissue |
| GSM885810 |
HCC1007N, non-tumor tissue |
| GSM885811 |
HCC1007T, tumor tissue |
| GSM885812 |
HCC1014N, non-tumor tissue |
| GSM885813 |
HCC1014T, tumor tissue |
| GSM885814 |
HCC1016N, non-tumor tissue |
| GSM885815 |
HCC1016T, tumor tissue |
| GSM885816 |
HCC1019N, non-tumor tissue |
| GSM885817 |
HCC1019T, tumor tissue |
| GSM885818 |
HCC1020N, non-tumor tissue |
| GSM885819 |
HCC1020T, tumor tissue |
| GSM885820 |
HCC1021N, non-tumor tissue |
| GSM885821 |
HCC1021T, tumor tissue |
| GSM885822 |
HCC1023N, non-tumor tissue |
| GSM885823 |
HCC1023T, tumor tissue |
| GSM885824 |
HCC1024N, non-tumor tissue |
| GSM885825 |
HCC1024T, tumor tissue |
| GSM885826 |
HCC1027N, non-tumor tissue |
| GSM885827 |
HCC1027T, tumor tissue |
| GSM885828 |
HCC1029N, non-tumor tissue |
| GSM885829 |
HCC1029T, tumor tissue |
| GSM885830 |
HCC1031N, non-tumor tissue |
| GSM885831 |
HCC1031T, tumor tissue |
| GSM885832 |
HCC1032N, non-tumor tissue |
| GSM885833 |
HCC1032T, tumor tissue |
| GSM885834 |
HCC422N, non-tumor tissue |
| GSM885835 |
HCC422T, tumor tissue |
| GSM885836 |
HCC424N, non-tumor tissue |
| GSM885837 |
HCC424T, tumor tissue |
| GSM885838 |
HCC428N, non-tumor tissue |
| GSM885839 |
HCC428T, tumor tissue |
| GSM885840 |
HCC431N, non-tumor tissue |
| GSM885841 |
HCC431T, tumor tissue |
| GSM885842 |
HCC437N, non-tumor tissue |
| GSM885843 |
HCC437T, tumor tissue |
| GSM885844 |
HCC439N, non-tumor tissue |
| GSM885845 |
HCC439T, tumor tissue |
| GSM885846 |
HCC440N, non-tumor tissue |
| GSM885847 |
HCC440T, tumor tissue |
| GSM885848 |
HCC443N, non-tumor tissue |
| GSM885849 |
HCC443T, tumor tissue |
| GSM885850 |
HCC446N, non-tumor tissue |
| GSM885851 |
HCC446T, tumor tissue |
| GSM885852 |
HCC448N, non-tumor tissue |
| GSM885853 |
HCC448T, tumor tissue |
| GSM885854 |
HCC449N, non-tumor tissue |
| GSM885855 |
HCC449T, tumor tissue |
| GSM885856 |
HCC450N, non-tumor tissue |
| GSM885857 |
HCC450T, tumor tissue |
| GSM885858 |
HCC453N, non-tumor tissue |
| GSM885859 |
HCC453T, tumor tissue |
| GSM885860 |
HCC456N, non-tumor tissue |
| GSM885861 |
HCC456T, tumor tissue |
| GSM885862 |
HCC459N, non-tumor tissue |
| GSM885863 |
HCC459T, tumor tissue |
| GSM885864 |
HCC462N, non-tumor tissue |
| GSM885865 |
HCC462T, tumor tissue |
| GSM885866 |
HCC463N, non-tumor tissue |
| GSM885867 |
HCC463T, tumor tissue |
| GSM885868 |
HCC466N, non-tumor tissue |
| GSM885869 |
HCC466T, tumor tissue |
| GSM885870 |
HCC467N, non-tumor tissue |
| GSM885871 |
HCC467T, tumor tissue |
| GSM885872 |
HCC469N, non-tumor tissue |
| GSM885873 |
HCC469T, tumor tissue |
| GSM885874 |
HCC479N, non-tumor tissue |
| GSM885875 |
HCC479T, tumor tissue |
| GSM885876 |
HCC480N, non-tumor tissue |
| GSM885877 |
HCC480T, tumor tissue |
| GSM885878 |
HCC482N, non-tumor tissue |
| GSM885879 |
HCC482T, tumor tissue |
| GSM885880 |
HCC484N, non-tumor tissue |
| GSM885881 |
HCC484T, tumor tissue |
| GSM885882 |
HCC487N, non-tumor tissue |
| GSM885883 |
HCC487T, tumor tissue |
| GSM885884 |
HCC488N, non-tumor tissue |
| GSM885885 |
HCC488T, tumor tissue |
| GSM885886 |
HCC491N, non-tumor tissue |
| GSM885887 |
HCC491T, tumor tissue |
| GSM885888 |
HCC493N, non-tumor tissue |
| GSM885889 |
HCC493T, tumor tissue |
| GSM885890 |
HCC496N, non-tumor tissue |
| GSM885891 |
HCC496T, tumor tissue |
| GSM885892 |
HCC499N, non-tumor tissue |
| GSM885893 |
HCC499T, tumor tissue |
| GSM885894 |
HCC501N, non-tumor tissue |
| GSM885895 |
HCC501T, tumor tissue |
| GSM885896 |
HCC502N, non-tumor tissue |
| GSM885897 |
HCC502T, tumor tissue |
| GSM885898 |
HCC503N, non-tumor tissue |
| GSM885899 |
HCC503T, tumor tissue |
| GSM885900 |
HCC505N, non-tumor tissue |
| GSM885901 |
HCC505T, tumor tissue |
| GSM885902 |
HCC506N, non-tumor tissue |
| GSM885903 |
HCC506T, tumor tissue |
| GSM885904 |
HCC510N, non-tumor tissue |
| GSM885905 |
HCC510T, tumor tissue |
| GSM885906 |
HCC520N, non-tumor tissue |
| GSM885907 |
HCC520T, tumor tissue |
| GSM885908 |
HCC523N, non-tumor tissue |
| GSM885909 |
HCC523T, tumor tissue |
| GSM885910 |
HCC525N, non-tumor tissue |
| GSM885911 |
HCC525T, tumor tissue |
| GSM885912 |
HCC526N, non-tumor tissue |
| GSM885913 |
HCC526T, tumor tissue |
| GSM885914 |
HCC531N, non-tumor tissue |
| GSM885915 |
HCC531T, tumor tissue |
| GSM885916 |
HCC532N, non-tumor tissue |
| GSM885917 |
HCC532T, tumor tissue |
| GSM885918 |
HCC533N, non-tumor tissue |
| GSM885919 |
HCC533T, tumor tissue |
| GSM885920 |
HCC534N, non-tumor tissue |
| GSM885921 |
HCC534T, tumor tissue |
| GSM885922 |
HCC536N, non-tumor tissue |
| GSM885923 |
HCC536T, tumor tissue |
| GSM885924 |
HCC541N, non-tumor tissue |
| GSM885925 |
HCC541T, tumor tissue |
| GSM885926 |
HCC542N, non-tumor tissue |
| GSM885927 |
HCC542T, tumor tissue |
| GSM885928 |
HCC545N, non-tumor tissue |
| GSM885929 |
HCC545T, tumor tissue |
| GSM885930 |
HCC546N, non-tumor tissue |
| GSM885931 |
HCC546T, tumor tissue |
| GSM885932 |
HCC548N, non-tumor tissue |
| GSM885933 |
HCC548T, tumor tissue |
| GSM885934 |
HCC550N, non-tumor tissue |
| GSM885935 |
HCC550T, tumor tissue |
| GSM885936 |
HCC551N, non-tumor tissue |
| GSM885937 |
HCC551T, tumor tissue |
| GSM885938 |
HCC554N, non-tumor tissue |
| GSM885939 |
HCC554T, tumor tissue |
| GSM885940 |
HCC555N, non-tumor tissue |
| GSM885941 |
HCC555T, tumor tissue |
| GSM885942 |
HCC556N, non-tumor tissue |
| GSM885943 |
HCC556T, tumor tissue |
| GSM885944 |
HCC559N, non-tumor tissue |
| GSM885945 |
HCC559T, tumor tissue |
| GSM885946 |
HCC560N, non-tumor tissue |
| GSM885947 |
HCC560T, tumor tissue |
| GSM885948 |
HCC563N, non-tumor tissue |
| GSM885949 |
HCC563T, tumor tissue |
| GSM885950 |
HCC569N, non-tumor tissue |
| GSM885951 |
HCC569T, tumor tissue |
| GSM885952 |
HCC571N, non-tumor tissue |
| GSM885953 |
HCC571T, tumor tissue |
| GSM885954 |
HCC581N, non-tumor tissue |
| GSM885955 |
HCC581T, tumor tissue |
| GSM885956 |
HCC582N, non-tumor tissue |
| GSM885957 |
HCC582T, tumor tissue |
| GSM885958 |
HCC583N, non-tumor tissue |
| GSM885959 |
HCC583T, tumor tissue |
| GSM885960 |
HCC586N, non-tumor tissue |
| GSM885961 |
HCC586T, tumor tissue |
| GSM885962 |
HCC590N, non-tumor tissue |
| GSM885963 |
HCC590T, tumor tissue |
| GSM885964 |
HCC591N, non-tumor tissue |
| GSM885965 |
HCC591T, tumor tissue |
| GSM885966 |
HCC593N, non-tumor tissue |
| GSM885967 |
HCC593T, tumor tissue |
| GSM885968 |
HCC594N, non-tumor tissue |
| GSM885969 |
HCC594T, tumor tissue |
| GSM885970 |
HCC597N, non-tumor tissue |
| GSM885971 |
HCC597T, tumor tissue |
| GSM885972 |
HCC602N, non-tumor tissue |
| GSM885973 |
HCC602T, tumor tissue |
| GSM885974 |
HCC605N, non-tumor tissue |
| GSM885975 |
HCC605T, tumor tissue |
| GSM885976 |
HCC607N, non-tumor tissue |
| GSM885977 |
HCC607T, tumor tissue |
| GSM885978 |
HCC611N, non-tumor tissue |
| GSM885979 |
HCC611T, tumor tissue |
| GSM885980 |
HCC612N, non-tumor tissue |
| GSM885981 |
HCC612T, tumor tissue |
| GSM885982 |
HCC625N, non-tumor tissue |
| GSM885983 |
HCC625T, tumor tissue |
| GSM885984 |
HCC635N, non-tumor tissue |
| GSM885985 |
HCC635T, tumor tissue |
| GSM885986 |
HCC636N, non-tumor tissue |
| GSM885987 |
HCC636T, tumor tissue |
| GSM885988 |
HCC641N, non-tumor tissue |
| GSM885989 |
HCC641T, tumor tissue |
| GSM885990 |
HCC646N, non-tumor tissue |
| GSM885991 |
HCC646T, tumor tissue |
| GSM885992 |
HCC648N, non-tumor tissue |
| GSM885993 |
HCC648T, tumor tissue |
| GSM885994 |
HCC652N, non-tumor tissue |
| GSM885995 |
HCC652T, tumor tissue |
| GSM885996 |
HCC654N, non-tumor tissue |
| GSM885997 |
HCC654T, tumor tissue |
| GSM885998 |
HCC657N, non-tumor tissue |
| GSM885999 |
HCC657T, tumor tissue |
| GSM886000 |
HCC663N, non-tumor tissue |
| GSM886001 |
HCC663T, tumor tissue |
| GSM886002 |
HCC668N, non-tumor tissue |
| GSM886003 |
HCC668T, tumor tissue |
| GSM886004 |
HCC669N, non-tumor tissue |
| GSM886005 |
HCC669T, tumor tissue |
| GSM886006 |
HCC674N, non-tumor tissue |
| GSM886007 |
HCC674T, tumor tissue |
| GSM886008 |
HCC677N, non-tumor tissue |
| GSM886009 |
HCC677T, tumor tissue |
| GSM886010 |
HCC678N, non-tumor tissue |
| GSM886011 |
HCC678T, tumor tissue |
| GSM886012 |
HCC990N, non-tumor tissue |
| GSM886013 |
HCC990T, tumor tissue |
| GSM886014 |
HCC991N, non-tumor tissue |
| GSM886015 |
HCC991T, tumor tissue |
| GSM886016 |
HCC992N, non-tumor tissue |
| GSM886017 |
HCC992T, tumor tissue |
| GSM886018 |
HCC994N, non-tumor tissue |
| GSM886019 |
HCC994T, tumor tissue |
| GSM886020 |
HCC995N, non-tumor tissue |
| GSM886021 |
HCC995T, tumor tissue |
| GSM886022 |
HCC996N, non-tumor tissue |
| GSM886023 |
HCC996T, tumor tissue |
| GSM886024 |
HCC997N, non-tumor tissue |
| GSM886025 |
HCC997T, tumor tissue |
| GSM886026 |
HCC998N, non-tumor tissue |
| GSM886027 |
HCC998T, tumor tissue |
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| Relations |
| BioProject |
PRJNA153005 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE36277_RAW.tar |
18.8 Mb |
(http)(custom) |
TAR (of GPR) |
| Processed data included within Sample table |
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