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Status |
Public on Apr 25, 2012 |
Title |
[E-MTAB-935] GENCODE PCR-Seq Batch VII |
Project |
ENCODE
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Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch VII, which targets annotations from Gencode 8 (March 2011).
ArrayExpress Release Date: 2012-02-01
Publication Title: GENCODE: producing a reference annotation for ENCODE Publication Author List: Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R
Person Roles: submitter Person Last Name: Gonzalez Person First Name: Jose Person Mid Initials: M Person Email: jmg@sanger.ac.uk Person Phone: -498006 Person Address: Wellcome Trust Genome Campus, Hinxton, UK Person Affiliation: Wellcome Trust Sanger Institute
Person Roles: investigator Person Last Name: Hubbard Person First Name: Tim Person Mid Initials: Person Email: th@sanger.ac.uk Person Phone: -498055 Person Address: Wellcome Trust Genome Campus, Hinxton, UK Person Affiliation: Wellcome Trust Sanger Institute
Person Roles: investigator Person Last Name: Reymond Person First Name: Alexandre Person Mid Initials: Person Email: Alexandre.Reymond@unil.ch Person Phone: Person Address: Lausanne, Switzerland Person Affiliation: University of Lausanne
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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Overall design |
Experimental Design: organism_part_comparison_design Experimental Design: reference_design Experimental Design: co-expression_design Experimental Factor Name: ORGANISMPART Experimental Factor Type: organism_part
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Web link |
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
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Citation(s) |
16925838 |
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Submission date |
Apr 25, 2012 |
Last update date |
May 15, 2019 |
Organization |
European Bioinformatics Institute |
E-mail(s) |
miamexpress@ebi.ac.uk
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Lab |
ArrayExpress
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Street address |
Wellcome Trust Genome Campus
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City |
Hinxton |
State/province |
Cambridgeshire |
ZIP/Postal code |
CB10 1SD |
Country |
United Kingdom |
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Platforms (1) |
GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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Samples (8)
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GSM923031 |
[E-MTAB-935] polyA+_brain_6120217, Batch_7_brain |
GSM923032 |
[E-MTAB-935] polyA+_heart_7082801A, Batch_7_heart |
GSM923033 |
[E-MTAB-935] polyA+_kidney_7110096, Batch_7_kidney |
GSM923034 |
[E-MTAB-935] polyA+_liver_6100188, Batch_7_liver |
GSM923035 |
[E-MTAB-935] polyA+_lung_1100350, Batch_7_lung |
GSM923036 |
[E-MTAB-935] polyA+_muscle_7040106, Batch_7_muscle |
GSM923037 |
[E-MTAB-935] polyA+_spleen_6090097, Batch_7_spleen |
GSM923038 |
[E-MTAB-935] polyA+_testis_7060321, Batch_7_testis |
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Relations |
SRA |
ERP001145 |
ArrayExpress |
E-MTAB-935 |
BioProject |
PRJNA161895 |
Supplementary data files not provided |
SRA Run Selector |
Processed data not provided for this record |
Raw data are available in SRA |
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