|
| Status |
Public on Dec 31, 2012 |
| Title |
The GacA transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces |
| Platform organism |
Pseudomonas protegens Pf-5 |
| Sample organism |
Pseudomonas protegens |
| Experiment type |
Expression profiling by array
|
| Summary |
Transcriptomic profiling of a gacA mutant of Pseudomonas protegens Pf-5 in comparison to the wild-type Pf-5 strain grown on pea seed surfaces for 24h.
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| |
|
| Overall design |
Two-condition experiment, the gacA mutant compared to wild-type Pf-5 grown on pea seed surfaces for 24 h. There are three biological replicates and two flip-dye replicates for a total of six slides analyzed. Each slide contains four replicate spots per gene.
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| |
|
| Contributor(s) |
Kidarsa TA, Paulsen IT, Loper JE |
| Citation(s) |
23297839 |
| Submission date |
Jun 11, 2012 |
| Last update date |
May 01, 2013 |
| Contact name |
Joyce Loper |
| E-mail(s) |
Joyce.Loper@ars.usda.gov
|
| Phone |
541-738-4057
|
| Organization name |
USDA-ARS
|
| Department |
Horticultural Crops Research Laboratory
|
| Street address |
3420 NW Orchard Ave
|
| City |
Corvallis |
| State/province |
OR |
| ZIP/Postal code |
97330 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL7621 |
JCVI Pseudomonas fluorescens Pf-5 28k v2.0 |
|
| Samples (6)
|
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| This SubSeries is part of SuperSeries: |
| GSE38633 |
Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS |
|
| Relations |
| BioProject |
PRJNA168310 |
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