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Series GSE39109 Query DataSets for GSE39109
Status Public on Jul 06, 2012
Title A genetic basis for a postmeiotic X vs. Y chromosome intragenomic conflict in the mouse
Organism Mus musculus
Experiment type Expression profiling by array
Summary The Y-encoded multicopy gene Sly has been shown to repress X and Y genes in spermatids, among which are its X-linked homologs Slx and Slxl1, via modulation of post-meiotic sex chromain (PMSC). In this experiment, we compared expression in spermatids from mice that are deficient for Sly (shSLY), for Slx/Slxl1 (shSLX1) or both (shSLX1shSLY). We observed that Slx/Slxl1 has an opposite role to that of Sly, and stimulates expression of X and Y genes in spermatids when Sly is absent. Slx/Slxl1 deficiency rescues the sperm differentiation defects and near sterility caused by Sly deficiency and vice versa. Slx/Slxl1 deficiency also causes a sex ratio distortion towards the production of male offspring that is corrected by Sly deficiency.
 
Overall design Wild type strain-matched spermatids are used as a control (4 biological replicates), and 3 biological replicate samples are analysed for each genotype of interest (shSLY, shSLX1 and shSLX1shSLY)
 
Contributor(s) Cocquet J, Ellis PJ, Mahadevaiah SK, Affara NA, Vaiman D, Burgoyne PS
Citation(s) 23028340
Submission date Jul 04, 2012
Last update date Jan 16, 2019
Contact name Peter James Ellis
E-mail(s) p.j.i.ellis@kent.ac.uk
Phone 07808167834
Organization name University of Kent
Department School of Biosciences
Street address Stacey Building
City Canterbury
State/province Kent
ZIP/Postal code CT2 7NJ
Country United Kingdom
 
Platforms (1)
GPL6887 Illumina MouseWG-6 v2.0 expression beadchip
Samples (13)
GSM956234 WT spermatid 1
GSM956235 WT spermatid 2
GSM956236 WT spermatid 3
Relations
BioProject PRJNA170025

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39109_RAW.tar 15.8 Mb (http)(custom) TAR
GSE39109_non_normalized.txt.gz 3.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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