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GEO accession:
Series GSE39809
Query DataSets for GSE39809
Status
Public on Aug 02, 2012
Title
MicroRNA expression profiling after short-term exposure to TCDD in zebrafish embryos
Platform organisms
Danio rerio
;
Homo sapiens
;
Mus musculus
;
Rattus norvegicus
;
Human alphaherpesvirus 1
;
Human betaherpesvirus 5
;
human gammaherpesvirus 4
;
JC polyomavirus
;
Human immunodeficiency virus 1
;
Human gammaherpesvirus 8
;
Betapolyomavirus hominis
;
Betapolyomavirus macacae
Sample organism
Danio rerio
Experiment type
Non-coding RNA profiling by array
Non-coding RNA profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
22921993
Submission date
Aug 01, 2012
Last update date
May 15, 2019
Contact name
Neelakanteswar Aluru
E-mail(s)
naluru@whoi.edu
Phone
508-289-3607
Organization name
Woods Hole Oceanographic Institution
Department
Biology
Lab
Aluru Lab
Street address
45 Water Street
City
Woods Hole
State/province
MA
ZIP/Postal code
02543
Country
USA
Platforms (3)
GPL7724
miRCURY LNA microRNA Array, v. 9.2, all organisms
GPL10658
AB SOLiD System 3.0 (Danio rerio)
GPL15720
8x15K custom made zebrafish miRNA microarray [Agilent-024479]
Samples (36)
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GSM979539
36_DMSO_1 [agilent]
GSM979540
36_DMSO_2 [agilent]
GSM979541
36_DMSO_3 [agilent]
GSM979542
36_TCDD_1 [agilent]
GSM979543
36_TCDD_2 [agilent]
GSM979544
36_TCDD_3 [agilent]
GSM979545
60_DMSO_1 [agilent]
GSM979546
60_DMSO_2 [agilent]
GSM979547
60_DMSO_3 [agilent]
GSM979548
60_TCDD_1 [agilent]
GSM979549
60_TCDD_2 [agilent]
GSM979550
60_TCDD_3 [agilent]
GSM979551
36_DMSO_1 [exiqon]
GSM979552
36_DMSO_2 [exiqon]
GSM979553
36_DMSO_3 [exiqon]
GSM979554
36_TCDD_1 [exiqon]
GSM979555
36_TCDD_2 [exiqon]
GSM979556
36_TCDD_3 [exiqon]
GSM979557
60_DMSO_1 [exiqon]
GSM979558
60_DMSO_2 [exiqon]
GSM979559
60_DMSO_3 [exiqon]
GSM979560
60_TCDD_1 [exiqon]
GSM979561
60_TCDD_2 [exiqon]
GSM979562
60_TCDD_3 [exiqon]
GSM979597
36hpf-DMSO-1
GSM979598
36hpf-DMSO-2
GSM979599
36hpf-DMSO-3
GSM979600
36hpf-TCDD-1
GSM979601
36hpf-TCDD-2
GSM979602
36hpf-TCDD-3
GSM979603
60hpf-DMSO-1
GSM979604
60hpf-DMSO-2
GSM979605
60hpf-DMSO-3
GSM979606
60hpf-TCDD-1
GSM979607
60hpf-TCDD-2
GSM979608
60hpf-TCDD-3
This SuperSeries is composed of the following SubSeries:
GSE38839
MicroRNA expression profiling after short-term exposure to TCDD in zebrafish embryos [agilent and exiqon array data]
GSE39808
MicroRNA expression profiling after short-term exposure to TCDD in zebrafish embryos [miRNA-Seq data]
Relations
BioProject
PRJNA171747
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
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File type/resource
GSE39809_RAW.tar
30.7 Mb
(http)
(custom)
TAR (of TXT)
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