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| Status |
Public on Sep 30, 2012 |
| Title |
Expression data from Arabidopsis roots and shoots grown with or without iron |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
Iron-deficiency repsonses in Arabidopsis are controlled by several bHLH transcription factors. FIT, for example has been shown to direct iron-uptake responses. However, the role of shoot and root expressed genes bHLH100 and bHLH101 has not be clarified. We used microarray to study what genes might be miss-regulated in the double mutant bhlh100/bhlh101 background
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| Overall design |
10-day-old Arabidopsis plants were divided into root and shoot tissues and harvested for RNA extraction.
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| Contributor(s) |
Sivitz AB, Curie C, Vert G |
| Citation(s) |
22984573 |
| Submission date |
Aug 13, 2012 |
| Last update date |
Aug 15, 2018 |
| Contact name |
Alicia Sivitz |
| Organization name |
Dartmouth College
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| Street address |
78 College St
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| City |
Hanover |
| State/province |
NH |
| ZIP/Postal code |
03755 |
| Country |
USA |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (24)
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| GSM984719 |
shoots of bhlh100/101 0uM Fe, biological rep1 |
| GSM984720 |
shoots of bhlh100/101 0uM Fe, biological rep2 |
| GSM984721 |
shoots of bhlh100/101 0uM Fe, biological rep3 |
| GSM984722 |
shoots of bhlh100/101 100uM Fe, biological rep1 |
| GSM984723 |
shoots of bhlh100/101 100uM Fe, biological rep2 |
| GSM984724 |
shoots of bhlh100/101 100uM Fe, biological rep3 |
| GSM984725 |
shoots of WT 0uM Fe, biological rep1 |
| GSM984726 |
shoots of WT 0uM Fe, biological rep2 |
| GSM984727 |
shoots of WT 0uM Fe, biological rep3 |
| GSM984728 |
shoots of WT 100uM Fe, biological rep1 |
| GSM984729 |
shoots of WT 100uM Fe, biological rep2 |
| GSM984730 |
shoots of WT 100uM Fe, biological rep3 |
| GSM984731 |
roots of bhlh100/101 0uM Fe, biological rep1 |
| GSM984732 |
roots of bhlh100/101 0uM Fe, biological rep2 |
| GSM984733 |
roots of bhlh100/101 0uM Fe, biological rep3 |
| GSM984734 |
roots of bhlh100/101 100uM Fe, biological rep1 |
| GSM984735 |
roots of bhlh100/101 100uM Fe, biological rep2 |
| GSM984736 |
roots of bhlh100/101 100uM Fe, biological rep3 |
| GSM984737 |
roots of WT 0uM Fe, biological rep1 |
| GSM984738 |
roots of WT 0uM Fe, biological rep2 |
| GSM984739 |
roots of WT 0uM Fe, biological rep3 |
| GSM984740 |
roots of WT 100uM Fe, biological rep1 |
| GSM984741 |
roots of WT 100uM Fe, biological rep2 |
| GSM984742 |
roots of WT 100uM Fe, biological rep3 |
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| Relations |
| Affiliated with |
GSE69995 |
| BioProject |
PRJNA172742 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE40076_RAW.tar |
46.8 Mb |
(http)(custom) |
TAR (of CEL) |
| GSE40076_merged_replicates.txt.gz |
3.0 Mb |
(ftp)(http) |
TXT |
| Processed data included within Sample table |
| Processed data are available on Series record |
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