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Series GSE40506 Query DataSets for GSE40506
Status Public on Aug 31, 2012
Title Genome-wide mapping of Olig2 targets in primary oligodendrocytes
Organism Rattus norvegicus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Myelination by oligodendrocytes in the central nervous system (CNS) is essential for proper brain function, yet the molecular determinants that control this process remain poorly understood. The basic helix-loop-helix transcription factors Olig1 and Olig2 promote myelination, whereas bone morphogenetic protein (BMP) and Wnt/β-catenin signaling inhibit myelination. Here we show that these opposing regulators of myelination are functionally linked by the Olig1/2 common target Smad-interacting protein-1 (Sip1). We demonstrate that Sip1 is an essential modulator of CNS myelination. Sip1 represses differentiation inhibitory signals by antagonizing BMP receptor-activated Smad activity while activating crucial oligodendrocyte-promoting factors. Importantly, a key Sip1-activated target, Smad7, is required for oligodendrocyte differentiation and partially rescues differentiation defects caused by Sip1 loss. Smad7 promotes myelination by blocking the BMP- and β-catenin-negative regulatory pathways. Thus, our findings reveal that Sip1-mediated antagonism of inhibitory signaling is critical for promoting CNS myelination and point to new mediators for myelin repair.
 
Overall design ChIP-seq was performed to identify Olig2 direct target genes in oligodendrocytes during oligodendrocyte differentiation.
 
Contributor(s) Lu QR
Citation(s) 22365546
Submission date Aug 30, 2012
Last update date May 15, 2019
Contact name Qing Richard Lu
E-mail(s) QRichard.Lu@UTSouthwestern.edu
Organization name UT southwestern medical center
Street address 5323 Harry Hines Boulevard
City Dallas
ZIP/Postal code 75390
Country USA
 
Platforms (1)
GPL11282 Illumina Genome Analyzer (Rattus norvegicus)
Samples (2)
GSM995388 Olig2_ChIP-seq
GSM995389 Control ChIP-seq
This SubSeries is part of SuperSeries:
GSE40431 Dual-mode modulation of Smad signaling by Smad-interacting protein Sip1 is required for myelination in the central nervous system
Relations
BioProject PRJNA174195
SRA SRP015333

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40506_RAW.tar 815.6 Mb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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