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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 08, 2012 |
| Title |
CTCF binding patterns in mouse trophoblast stem cells |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This Series reports data from a CTCF ChIP-Seq experiment performed in F1-hybrid mouse trophoblast stem cells (TSCs). The data are part of a larger study examining inactive X gene expression and chromatin states, reported as GEO Series GSE39406. Included for this dataset are FASTQ files, BED alignments and WIG files with coordinates relative to UCSC genome build mm9, and _snp files that report the location of all SNP-overlapping reads
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| Overall design |
Single CTCF ChIP-Seq experiment
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| Citation(s) |
22906166 |
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| Submission date |
Sep 06, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
J Mauro Calabrese |
| E-mail(s) |
jmcalabr@med.unc.edu
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| Phone |
919-843-3257
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| Organization name |
UNC-Chapel Hill
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| Department |
Pharmacology
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| Street address |
120 Mason Farm Road
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| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27516 |
| Country |
USA |
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| Platforms (1) |
| GPL11002 |
Illumina Genome Analyzer IIx (Mus musculus) |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA174628 |
| SRA |
SRP015460 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE40667_RAW.tar |
906.8 Mb |
(http)(custom) |
TAR (of BED, TXT, WIG) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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