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Status |
Public on Oct 01, 2012 |
Title |
Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing Other
|
Summary |
We mapped CstF64-RNA interactions at the transcriptome level and studied CstF64-mediated regulation of global mRNA alternative polyadenylation by using iCLIP-seq and direct RNA sequencing analyses.
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Overall design |
CstF64 iCLIP-seq in HeLa cells; direct RNA sequencing (DRS) of control HeLa cells, CstF64-RNAi cells and CstF64&CstF64tau-RNAi cells
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Contributor(s) |
Yao C, Biesinger J, Wan J, Weng L, Xing Y, Xie X, Shi Y |
Citation(s) |
23112178 |
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Submission date |
Sep 13, 2012 |
Last update date |
May 15, 2019 |
Contact name |
Yongsheng Shi |
E-mail(s) |
yongshes@uci.edu
|
Phone |
9498240358
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Organization name |
University of California, Irvine
|
Department |
Microbiology and Molecular Genetics
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Street address |
B228 Med Sci I
|
City |
Irvine |
State/province |
CA |
ZIP/Postal code |
92697 |
Country |
USA |
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Platforms (2) |
GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
GPL14761 |
Helicos HeliScope (Homo sapiens) |
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Samples (6)
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GSM1003590 |
direct RNA sequencing (DRS) of control HeLa cells |
GSM1003591 |
direct RNA sequencing (DRS) of CstF64-RNAi cells |
GSM1003592 |
direct RNA sequencing (DRS) of CstF64&t-RNAi cells |
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Relations |
BioProject |
PRJNA175123 |
SRA |
SRP015741 |