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| Status |
Public on Sep 27, 2012 |
| Title |
Impact of Ischemia and Procurement Conditions on Gene Expression in Renal Cell Carcinoma |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Previous studies have shown that ischemia alters gene expression in normal and malignant tissues. There are no studies that evaluated effects of ischemia in renal tumors. This study examines the impact of ischemia and tissue procurement conditions on RNA integrity and gene expression in renal cell carcinoma.
We used microarray analysis to evaulate the effect of ischemia and tissue procurement conditions on the gene expression changes in renal cell carcinoma
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| Overall design |
Ten renal tumors were resected without renal hilar clamping from 10 patients with renal clear cell carcinoma. Immediately after tumor resection, a piece of tumor was snap frozen. Remaining tumor samples were stored at 4C, 22C and 37C and frozen at 5, 30, 60, 120, and 240 minutes. Histopathologic evaluation was performed on all tissue samples, and only those with greater than 80% tumor were selected for further analysis. RNA integrity was confirmed by electropherograms and quantitated using RIN index. Gene expression study was done on Affymetrix HG 133 Plus 2.0 Platform. Altered gene expression was assessed by paired, two-sample t-test between the zero time point and aliquots from various conditions obtained from the same tumor.
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| Contributor(s) |
Liu N, Bratslavsky G |
| Citation(s) |
23136194 |
| |
| Submission date |
Sep 25, 2012 |
| Last update date |
Mar 25, 2019 |
| Contact name |
Nick Liu |
| E-mail(s) |
nick.liu@gmail.com
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| Organization name |
Indiana University Hospital
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| Department |
Department of Urology
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| Street address |
535 Barnhill Drive Suite 420
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| City |
INDIANAPOLIS |
| State/province |
Indiana |
| ZIP/Postal code |
46202 |
| Country |
USA |
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| Platforms (1) |
| GPL570 |
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array |
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| Samples (140)
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| Relations |
| BioProject |
PRJNA175967 |
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