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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 02, 2012 |
| Title |
Chip-chip from Candida albicans cells with HMS1-MYC, RTG1-MYC, RTG3-MYC, GFP-ZCF21, GFP-LYS14, GFP-LYS144 |
| Organism |
Candida albicans |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
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| Summary |
The transcription regulators HMS1, RTG1, RTG3, ZCF21, LYS14 and LYS144 play roles in the proliferation of C. albicans in a mammalian host.
Chromatin immunoprecipitation (ChIP) of HMS1-MYC, RTG1-MYC, RTG3-MYC, GFP-ZCF21, GFP-LYS14, GFP-LYS144 followed by array hybridization (Agilent) uncovered a network of target genes required for C. albicans to thrive in the host.
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| Overall design |
Comparison of IP/input in tagged strains to untagged cells immuniprecipitated with the same antibody.
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| Contributor(s) |
Perez JC, Johnson AD |
| Citation(s) |
23526879 |
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| Submission date |
Sep 30, 2012 |
| Last update date |
Nov 05, 2013 |
| Contact name |
Jose Christian Perez |
| E-mail(s) |
jchris_perez@yahoo.com
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| Phone |
415-476-8097
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| Organization name |
University of California, San Francisco
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| Department |
Microbiology and Immunology
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| Lab |
Alexander Johnson
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| Street address |
600 16th St.
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
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| Platforms (1) |
| GPL13696 |
Candida albicans 181K tiling ChIP array (assembly Ca20) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA176392 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE41237_RAW.tar |
203.3 Mb |
(http)(custom) |
TAR (of GPR) |
| Processed data included within Sample table |
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