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| Status |
Public on Oct 30, 2012 |
| Title |
Correlated alterations in genome organization, histone methylation, and DNA-lamina interactions in Hutchinson-Gilford progeria syndrome |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
23152449 |
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| Submission date |
Oct 22, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Rachel Patton McCord |
| E-mail(s) |
Rachel.McCord@umassmed.edu
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| Phone |
508-856-4377
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| Organization name |
University of Massachusetts Medical School
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| Department |
Program in Gene Function and Expression
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| Lab |
Job Dekker Lab
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| Street address |
364 Plantation St. LRB 570M
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| City |
Worcester |
| State/province |
MA |
| ZIP/Postal code |
01605 |
| Country |
USA |
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| Platforms (3) |
| GPL570 |
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array |
| GPL9052 |
Illumina Genome Analyzer (Homo sapiens) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
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| Samples (28)
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| GSM1023558 |
Father_rep2 |
| GSM1023559 |
AgeControl_rep1 |
| GSM1023560 |
AgeControl_rep2 |
| GSM1023610 |
H3K27me3 ChIP, Father, p14 |
| GSM1023611 |
H3K27me3 ChIP, Father, p14, INPUT |
| GSM1023612 |
H3K27me3 ChIP, Father, p19 |
| GSM1023613 |
H3K27me3 ChIP, Father, p19, INPUT |
| GSM1023614 |
H3K27me3 ChIP, Age Control, p17 |
| GSM1023615 |
H3K27me3 ChIP, Age Control, p17, INPUT |
| GSM1023616 |
H3K27me3 ChIP, HGPS, p14 |
| GSM1023617 |
H3K27me3 ChIP, HGPS, p14, INPUT |
| GSM1023618 |
H3K27me3 ChIP, HGPS, p17 |
| GSM1023619 |
H3K27me3 ChIP, HGPS, p17, INPUT |
| GSM1023620 |
LaminA ChIP, Father, p16, rep1 |
| GSM1023621 |
LaminA ChIP, Father, p16, INPUT, rep1 |
| GSM1023622 |
LaminA ChIP, Father, p16, rep2 |
| GSM1023623 |
LaminA ChIP, Father, p16, INPUT, rep2 |
| GSM1023624 |
LaminA ChIP, HGPS, p16, rep1 |
| GSM1023625 |
LaminA ChIP, HGPS, p16, INPUT, rep1 |
| GSM1023626 |
LaminA ChIP, HGPS, p16, rep2 |
| GSM1023627 |
LaminA ChIP, HGPS, p16, INPUT, rep2 |
| GSM1023732 |
Hi-C Normal Father Fibroblasts p18 |
| GSM1023733 |
Hi-C Normal Age-Control Fibroblasts p20 |
| GSM1023734 |
Hi-C Progeria (HGPS) Fibroblasts p17 |
| GSM1023735 |
Hi-C Progeria (HGPS) Fibroblasts p19 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE41751 |
Correlated alterations in genome organization, histone methylation, and DNA-lamina interactions in Hutchinson-Gilford progeria syndrome (expression) |
| GSE41757 |
Correlated alterations in genome organization, histone methylation, and DNA-lamina interactions in Hutchinson-Gilford progeria syndrome (ChIP-seq) |
| GSE41763 |
Correlated alterations in genome organization, histone methylation, and DNA-lamina interactions in Hutchinson-Gilford progeria syndrome (Hi-C) |
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| Relations |
| BioProject |
PRJNA178121 |
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