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Series GSE42205 Query DataSets for GSE42205
Status Public on Nov 09, 2012
Title Polyphenols from olive mill waste affect biofilm formation and motility in Escherichia coli K12
Platform organisms Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli str. K-12 substr. MG1655
Sample organism Escherichia coli K-12
Experiment type Expression profiling by array
Summary Genome-wide transcriptional analysis was performed on E. coli K12 exposed to 1 mg/ml of olive vegetation water phenolic extract (OVWPE) in planktonic condition.
 
Overall design Three groups of samples were considered: P group (three replicate cultures with OVWPE extract diluted in ethanol 20%), E group (three replicate cultures with ethanol 20% alone) C group (three control replicate cultures). 1 ml of VWPE extract (1 mg/ml), 1 ml of ethanol 20% and 1 ml of LB broth were added respectively to the three groups when the OD600 of each culture reached 0.4. Cultures were sampled (2 ml) at the time of treatment (t1), 20 (t2) and 40 (t3) minutes after treatment.
 
Contributor(s) Carraro L, Cardazzo B
Citation(s) 24628798
Submission date Nov 09, 2012
Last update date Sep 05, 2019
Contact name Lisa Carraro
E-mail(s) lisa.carraro@unipd.it
Phone +39 049 8272965
Fax +39 049 8272604
Organization name University of Padova
Department Department of Comparative Biomedicine and Food Science
Street address Viale dell'Università 16, Agripolis
City Legnaro
State/province Padova
ZIP/Postal code 35020
Country Italy
 
Platforms (1)
GPL13360 Agilent-020097 E. coli Gene Expression Microarray (Feature Number version)
Samples (27)
GSM1035349 E.coli_control_repA_t1
GSM1035350 E.coli_control_repA_t2
GSM1035351 E.coli_control_repA_t3
Relations
BioProject PRJNA179290

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42205_RAW.tar 63.4 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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