GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE42287 Query DataSets for GSE42287
Status Public on Nov 15, 2012
Title Depth Distribution of Ammonia Oxidation Rates and Ammonia-Oxidizer Community Composition in the Sargasso Sea
Platform organism synthetic construct
Sample organisms synthetic construct; uncultured ammonia-oxidizing archaeon
Experiment type Other
Summary Ammonia oxidizer community structure were examined in a depth profile from 20 to 2000 m at the Bermuda Atlantic Time-series Study using a functional gene microarray to look at amoA diversity
Overall design Two color array (cy3 and cy5): the universal standard 20 bp oligo (fluoresced with cy5) is printed to the slide with a 70-mer. Environmental DNA sequences (fluoresced with Cy3) within 15% of the 70-mer will bind to it. Signal is the cy3/cy5. Two replicate arrays were run on duplicate targets.
Contributor(s) Newell S, Ward B, Fawcett S
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 14, 2012
Last update date Nov 16, 2012
Contact name Silvia Newell
Organization name Boston University
Street address 675 Commonwealth Ave.
City Boston
State/province Massachusetts
ZIP/Postal code 02215
Country USA
Platforms (1)
GPL16282 Princeton Microarray Facility AOA Archetype Microarray BC015
Samples (8)
GSM1037140 water column DNA [20 m]
GSM1037141 water column DNA [40 m]
GSM1037142 water column DNA [80 m]
BioProject PRJNA179550

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42287_RAW.tar 880.0 Kb (http)(custom) TAR (of GPR)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap