|
| Status |
Public on Nov 01, 2013 |
| Title |
Transcriptomic responses to high water temperature in Pacific salmon [2007] |
| Platform organism |
Salmo salar |
| Sample organisms |
Oncorhynchus gorbuscha; Oncorhynchus nerka |
| Experiment type |
Expression profiling by array
|
| Summary |
Characterizing a common cellular stress response (CSR) to high water temperature across species and populations is necessary for identifying the capacity of Pacific salmon (Oncorhynchus spp.) to persist in current and future climate warming scenarios, especially for populations at the southern periphery of their species' distributions. In this study, populations of wild adult pink (O. gorbuscha) and sockeye (O. nerka) salmon from the Fraser River, British Columbia, Canada, were experimentally treated to an ecologically relevant 'cool' or 'warm' water temperature to uncover common transcriptomic responses to elevated water temperature.
|
| |
|
| Overall design |
Ninety-eight samples from three separate temperature exposure studies were analyzed on ninety-eight microarrays, using a common reference design, with multiple biological replicates for each temperature condition for each year of the experiment.
|
| |
|
| Contributor(s) |
Jeffries KM, Hinch SG, Sierocinski T, Pavlidis P, Miller KM |
| Citation(s) |
24567748 |
| |
| Submission date |
Nov 27, 2012 |
| Last update date |
Feb 14, 2019 |
| Contact name |
Ken Jeffries |
| E-mail(s) |
kenmjeffries@gmail.com
|
| Organization name |
University of British Columbia
|
| Street address |
2424 Main Mall
|
| City |
Vancouver |
| State/province |
British Columbia |
| ZIP/Postal code |
V6T 1Z4 |
| Country |
Canada |
| |
|
| Platforms (1) |
| GPL11299 |
Agilent-025055 Koop Lab Salmonid 44k |
|
| Samples (21)
|
|
| This SubSeries is part of SuperSeries: |
| GSE42558 |
Transcriptomic responses to high water temperature in Pacific salmon |
|
| Relations |
| BioProject |
PRJNA182256 |
Less...
More...