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Series GSE43321 Query DataSets for GSE43321
Status Public on Feb 22, 2013
Title mRNA-Seq of whole adult females and males, and miixed sex embryos, from multiple Drosophila species
Project modENCODE
Organisms Drosophila eugracilis; Drosophila takahashii; Drosophila elegans; Drosophila ficusphila; Drosophila kikkawai; Drosophila bipectinata; Drosophila biarmipes; Drosophila rhopaloa
Experiment type Expression profiling by high throughput sequencing
Summary We performed transcriptional profiling of sexed whole adults and mixed sex embryos of eight Drosophila species. These data were used in a comparative transcriptomics analysis of multiple Drosophila species to define functional elements conserved throughout the Drosophila genus.
Overall design For each species, wild-type inbred strains were analysed. Each sample represents an independent pool of flies (30 flies for adult samples, 200-300 ml for embryos).
Contributor(s) Sturgill D, Chen Z, Kopp A, Richards S, Oliver B
Citation(s) 24985915
BioProject PRJNA200701
Submission date Jan 07, 2013
Last update date May 15, 2019
Contact name Brian Oliver
Phone 301-204-9463
Organization name NIDDK, NIH
Department LBG
Lab Developmental Genomics
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platforms (16)
GPL16459 Illumina HiSeq 2000 (Drosophila biarmipes)
GPL16460 Illumina Genome Analyzer IIx (Drosophila biarmipes)
GPL16461 Illumina HiSeq 2000 (Drosophila bipectinata)
Samples (26)
GSM1060482 Dbia_Embryo_replicate1
GSM1060483 Dbia_Female_replicate1
GSM1060484 Dbia_Male_replicate1
This SubSeries is part of SuperSeries:
GSE44612 Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models
SRA SRP008370
SRA SRP008371
SRA SRP008372
SRA SRP008373
SRA SRP008374
SRA SRP008375
SRA SRP008376
SRA SRP008377

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43321_RAW.tar 16.6 Mb (http)(custom) TAR (of RPKM, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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