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Series GSE43426 Query DataSets for GSE43426
Status Public on Jan 01, 2015
Title Quantitative proteomics cell bilayer (qPCB) method for studying cell-cell communication
Organism Mus musculus
Experiment type Expression profiling by array
Summary Cellular communication is a fundamental process in biology. We developed an in vitro procedure for quantitatively analyzing proteome-wide changes triggered by interaction of different cell types. Using an adipocyte-macrophage bilayer co-culture model we detected thousands of proteins and deciphered regulatory pathways involved in low-grade inflammation leading to insulin resistance. The method can be applied for multiple cell-cell combinations to gain understanding in cellular interaction.
 
Overall design 2 cell lines (3T3-L1 adipocytes [A] and RAW 264.7 macrophages [R]), cultivated both as monolayer (condition 1 [O]) and together in a bilayer experiment (condition 2 [B]); 2-3 biological replicates per treatment (10 samples in total)
 
Contributor(s) Christopher W, Anja F, Sascha S
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Submission date Jan 10, 2013
Last update date Jan 16, 2019
Contact name Christopher Weidner
E-mail(s) weidner@molgen.mpg.de
Organization name Max Planck-Institute for Molecular Genetics
Department Otto Warburg Laboratory
Lab Sauer
Street address Ihnestraße 63
City Berlin
ZIP/Postal code 14195
Country Germany
 
Platforms (1)
GPL6887 Illumina MouseWG-6 v2.0 expression beadchip
Samples (10)
GSM1062322 3T3-L1 adipocytes, monolayer 1
GSM1062323 3T3-L1 adipocytes, monolayer 2
GSM1062324 3T3-L1 adipocytes, monolayer 3
Relations
BioProject PRJNA186076

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43426_RAW.tar 15.8 Mb (http)(custom) TAR
GSE43426_non-normalized.txt.gz 2.9 Mb (ftp)(http) TXT
Processed data included within Sample table

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