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Series GSE43466 Query DataSets for GSE43466
Status Public on Jan 12, 2013
Title Reconstruction of the Mycobacterium tuberculosis Regulatory Network and Deconstruction of the Hypoxic Response
Organism Mycobacterium tuberculosis H37Rv
Experiment type Expression profiling by array
Summary Expression data from hypoxic time course and transcription factor over expression experiments.
(Abstract from paper will be appended after publication)
 
Overall design Hypoxic time course experiments were done with a minimum of 3 replicates. TFOE are matched to the ChIP-seq experiment done simultaneously. This submission consists of the the gene expression component only.
 
Contributor(s) Rustad T, Minch K, Sherman D
Citation(s) 23823726
Submission date Jan 11, 2013
Last update date May 13, 2015
Contact name Tige Rustad
E-mail(s) tige.rustad@sbri.org
Phone 206-256-7207
Organization name Seattle Biomedical Research Institute
Department Pathobiology
Lab Sherman
Street address 307 Westlake Avenue N, Suite 500
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (1)
GPL14824 SBRI_MTuberculosis_12x130K_ver2.0
Samples (212)
GSM1084307 Rv0081 OE by Atc & 2h 0.2% O2 gas 0.1 ng Atc 18 Hours pEXCF_0081__hypoxic_0.1
GSM1084308 Rv0081 OE by Atc & 2h 0.2% O2 gas 1 ng Atc 18 Hours pEXCF_0081__hypoxic_1
GSM1084309 Rv0081 OE by Atc & 2h 0.2% O2 gas 10 ng Atc 18 Hours pEXCF_0081__hypoxic_10
Relations
BioProject PRJNA186476

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43466_RAW.tar 454.6 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table
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