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Series GSE43846 Query DataSets for GSE43846
Status Public on Jan 30, 2013
Title Expression data from cyclically stretched engineered neonatal rat ventricuar myocyte (NRVM) tissues
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary Mechanical overload in the heart induces pathological remodeling that typcially leads to heart failure. We sought to build an in vitro model of heart failure by applying cyclic stretch to engineered isotropic (iso) and anisotropic (aniso) NRVM tissues.
We used micoarrays to determine the effects of longitudinal and transvserse cyclic stretch on gene expression in engineered NRVM cardiac tissues. We found that cyclic stretch induced up-regulation of several known indicators of heart faliure, independent of the direction of stretch.
 
Overall design NRVMs were seeded on silicone membranes coated with isotropic (iso) fibronectin (FN) or micropatterned with FN (aniso), cultured statically for 1h (t=0h), and stretched for increasing amount of time (t=6h, 24h, 96h) before RNA extraction and hybridization on Affymetrix microarrays. For aniso tissues, stretch was applied in either the longitudinal (long) or transverse (trans) direction. RNA was collected over six primary NRVM harvests and thus RNA was also extracted and analyzed from samples seeded for 1h (at t=0h) on iso FN to be used to normalize across cell harvests.
 
Contributor(s) McCain ML, Sheehy SP, Parker KK
Citation(s) 23716679
Submission date Jan 29, 2013
Last update date Nov 06, 2013
Contact name Megan Laura McCain
E-mail(s) megan.mccain@gmail.com
Organization name Harvard University
Department Engineering and Applied Sciences
Lab Disease Biophysics Group
Street address 60 Oxford St Room 332
City Cambridge
State/province MA
ZIP/Postal code 02144
Country USA
 
Platforms (1)
GPL6247 [RaGene-1_0-st] Affymetrix Rat Gene 1.0 ST Array [transcript (gene) version]
Samples (51)
GSM1072042 NRVM_0h_01
GSM1072043 NRVM_0h_02
GSM1072044 NRVM_0h_03
Relations
BioProject PRJNA187574

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE43846_RAW.tar 219.0 Mb (http)(custom) TAR (of CEL, CHP)
GSE43846_analyzed_data_logFC.txt.gz 4.3 Mb (ftp)(http) TXT
GSE43846_annotatedRMA.txt.gz 8.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record
Processed data provided as supplementary file

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