|
| Status |
Public on Feb 15, 2013 |
| Title |
RNA-Sequencing and promoter chromatin profiles analysis of High Glucose Treated Monocytes |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
23386205 |
| |
| Submission date |
Jan 29, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Nancy Chen |
| E-mail(s) |
zhuchen@coh.org
|
| Organization name |
City of Hope
|
| Department |
Diabetes
|
| Street address |
1500 Duarte Road
|
| City |
Duarte |
| State/province |
CA |
| ZIP/Postal code |
91010 |
| Country |
USA |
| |
|
| Platforms (4)
|
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
| GPL15802 |
NimbleGen Human ChIP-CHIP 3 x 720k REFSEQ Promoter Array [090618_HG18_Refseq_Prom_ChIP and 100718_HG18_Refseq_Prom_ChIP] |
| GPL15975 |
NimbleGen Human DNA Methylation 385K RefSeq Promoter Array [2006-07-18_HG18_RefSeq_promoter] |
| GPL16378 |
NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array [100718_HG18_CpG_Refseq_Prom_MeDIP] |
|
| Samples (20)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE43868 |
Chip-chip from THP1 cells with H3K56Ac |
| GSE43869 |
Chip-chip from THP1 cells with H3K4me3, H3K9me2 , H3K27me3, JARIDIA, LSD1, JHDM1A, JHDM2A, JHDM3A, SIN3A, SNF2H, BRG1 |
| GSE43870 |
Chip-chip from THP1 cells with Pol II, Pol II Ser5-P, H3K9Ac and from primary monocytes with H3K4Me3 |
| GSE43925 |
RNA-Sequencing Analysis of High Glucose Treated Monocytes Reveals Novel Transcriptome Signatures and associated Epigenetic Profiles |
|
| Relations |
| BioProject |
PRJNA187978 |
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