|
| Status |
Public on Jun 27, 2013 |
| Title |
AGO-PAR-CLIP of DG75 and BCBL-1 |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
AGO-PAR-CLIP was employed to identify microRNA binding sites in BCBL-1, a Kaposi's sarcoma-associated herpesvirus (KSHV) infected B-cell line and DG75, a KSHV negative B-cell line as a control. By using our novel computational method (PARma) and differential analysis of PAR-CLIP data, highly accurate target sites of KSHV microRNAs can be defined.
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| |
|
| Overall design |
Examination of microRNA target sites in two different cell lines using replicate PAR-CLIP experiments
|
| |
|
| Contributor(s) |
Erhard F, Jaskiewicz L, Zavolan M, Doelken L, Zimmer R |
| Citation(s) |
24668909, 23895117 |
| Submission date |
Jan 30, 2013 |
| Last update date |
Aug 01, 2019 |
| Contact name |
Florian Erhard |
| E-mail(s) |
Florian.Erhard@uni-wuerzburg.de
|
| Organization name |
Julius-Maximilians-Universität Würzburg
|
| Department |
Institut für Virologie und Immunbiologie
|
| Street address |
Versbacher Str. 7
|
| City |
Würzburg |
| ZIP/Postal code |
97078 |
| Country |
Germany |
| |
|
| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
|
| Samples (4)
|
|
| Relations |
| BioProject |
PRJNA188176 |
| SRA |
SRP018317 |
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