|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Feb 22, 2013 |
Title |
H3K9me3 abcam.D.mel 3rd Instar Larvae Nuclei Su(var) 3-9 Mutant |
Project |
modENCODE
|
Organism |
Drosophila melanogaster |
Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
Summary |
modENCODE_submission_3696 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determine the locations of the major histone modifications across the Drosophila melanogaster genome. The modifications under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using genomic tiling arrays. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
|
|
|
Overall design |
EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Strain: Su(var)3-9 mutant
Developmental Stage: 3rd Instar Larvae; Genotype: Su(var)3-9 [6]/Su(var)3-9 [6]; NUMBER OF REPLICATES: 4; EXPERIMENTAL FACTORS: Strain Su(var)3-9 mutant Antibody H3K9me3 abcam (target is H3K9me3); Developmental Stage 3rd Instar Larvae
|
Web link |
http://www.modencode.org
|
|
|
Contributor(s) |
Karpen G, Elgin S, Gortchakov A, Shanower G, Tolstorukov M, Kharchenko P, Kuroda M, Pirrotta V, Park P, Minoda A, Riddle N, Schwartz Y, Alekseyenko A, Kennedy C |
Citation missing |
Has this study been published? Please login to update or notify GEO. |
BioProject |
PRJNA63463 |
|
Submission date |
Feb 21, 2013 |
Last update date |
Jul 08, 2015 |
Contact name |
DCC modENCODE |
E-mail(s) |
help@modencode.org
|
Phone |
416-673-8579
|
Organization name |
Ontario Institute for Cancer Research
|
Lab |
modENCODE DCC
|
Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
|
City |
Toronto |
State/province |
Ontario |
ZIP/Postal code |
M5G 0A3 |
Country |
Canada |
|
|
Platforms (1) |
GPL6629 |
[DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array |
|
Samples (4)
|
GSM1085795 |
H3K9me3 abcam Nuclear L3 Su(var) 3-9 D.melanogaster Input Rep1 |
GSM1085796 |
H3K9me3 abcam Nuclear L3 Su(var) 3-9 D.melanogaster Input Rep2 |
GSM1085797 |
H3K9me3 abcam Nuclear L3 Su(var) 3-9 D.melanogaster ChIP Rep1 |
GSM1085798 |
H3K9me3 abcam Nuclear L3 Su(var) 3-9 D.melanogaster ChIP Rep2 |
|
Supplementary file |
Size |
Download |
File type/resource |
GSE44472_RAW.tar |
184.0 Mb |
(http)(custom) |
TAR (of BEDGRAPH, CEL) |
GSE44472_repset.9702777.smoothedM.bedgraph.gz |
41.5 Mb |
(ftp)(http) |
BEDGRAPH |
Processed data provided as supplementary file |
Processed data are available on Series record |
|
|
|
|
|