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Series GSE4482 Query DataSets for GSE4482
Status Public on Mar 01, 2007
Title Microarray based Gene expression profiling of Cervical Cancer in India
Organism Homo sapiens
Experiment type Expression profiling by array
Summary This is a study to identify clinically relevant molecular signatures of gene expression in cervical cancer samples fro m patients in India
Keywords: Cancer versus normal study
 
Overall design Cervical cancer and non-malignant cervical cancer tissues are obtained from consenting patients following hospital ethics committee approved protocols. The samples are profiled against universal Human reference RNA from Stratagene on 19K EST microarrays from Microarray Center, University Health Network, Toronto, Canada. Cancer samples are compared against normal samples and outliers belonging to identifiable clusters, following unsupervised hierarchical clustering are validated by other biochemical means such as real time PCR and western blot.
 
Contributor(s) Kumar-Sinha C, Travasso CM, Samarth M
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 16, 2006
Last update date Jan 18, 2013
Contact name Chandan Kumar
E-mail(s) ckumar@actrec.res.in, drchandan.kumar@gmail.com
Phone +91-22-27405068
Fax +91-22-27412894
Organization name Tata Memorial Center
Department ACTREC
Lab CHANDAN Lab
Street address Kharghar Node
City Navi Mumbai
State/province Maharashtra
ZIP/Postal code 410208
Country India
 
Platforms (3)
GPL3515 UHN-Toronto 19K single spotted Human EST microarray v7
GPL3516 Chinnaiyan Lab Human 34K cDNA microarray-Jan2006
GPL4926 ACTREC Homo sapiens 23K
Samples (29)
GSM99077 Cervical cancer tissue (India: CaCx36)
GSM99078 Normal (non-malignant) cervical tissue (India: NCx1)
GSM99079 Normal (non-malignant) Cervical Tissue (India: NCx2)
Relations
BioProject PRJNA94355

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE4482_RAW.tar 75.8 Mb (http)(custom) TAR (of GPR, TXT)
GSE4482_supp_file.txt 1.1 Kb (ftp)(http) TXT

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