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| Status |
Public on Jun 01, 2014 |
| Title |
Transcriptomic profiles of wild brown trout chronically exposed to metals using RNA-seq in a Illumina GAII platform |
| Organism |
Salmo trutta |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To investigate mechanisms of metal tolerance in the gill, gut, kidney and liver of brown trout inhabiting the river Hayle (highly metal contaminated) compared with a control population from the river Teign.
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| Overall design |
mRNA samples were sequenced (Illumina GAII) from a pooled embryonic sample and 12 multiplexed samples of different tissues from the the Hayle and Teign populations (pooled from 5 and 10 individuals respectively) and used to generate a transcriptome assembly. Expression profiling was then conducted for the gill, gut, kidney and liver samples. Expression profiling results are presented in this Series.
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| |
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| Contributor(s) |
Uren Webster TM, Bury NR, van Aerle R, Santos EM |
| Citation(s) |
23834071 |
| Submission date |
Mar 29, 2013 |
| Last update date |
Aug 12, 2019 |
| Contact name |
Ronny van Aerle |
| E-mail(s) |
r.van-aerle@exeter.ac.uk
|
| Organization name |
University of Exeter
|
| Department |
Biosciences, College of Life and Environmental Sciences
|
| Lab |
van Aerle Lab
|
| Street address |
Stocker Road
|
| City |
Exeter |
| State/province |
Devon |
| ZIP/Postal code |
EX4 4QD |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL16932 |
Illumina Genome Analyzer II (Salmo trutta) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA195452 |
| SRA |
SRP020249 |
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