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GEO accession:
Series GSE45715
Query DataSets for GSE45715
Status
Public on Sep 30, 2013
Title
Genome-wide analysis of BRCA1 and PALB2
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
24591564
Submission date
Apr 02, 2013
Last update date
May 15, 2019
Contact name
Alessandro Gardini
E-mail(s)
agardini@wistar.org
Phone
305-243-7394
Organization name
University of Miami
Department
Sylvester Comprehensive Cancer Center
Lab
Ramin Shiekhattar
Street address
1501 NW 10 Avenue
City
Miami
State/province
FL
ZIP/Postal code
33136
Country
USA
Platforms (2)
GPL10558
Illumina HumanHT-12 V4.0 expression beadchip
GPL10999
Illumina Genome Analyzer IIx (Homo sapiens)
Samples (53)
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More...
GSM997540
BRCA1
GSM997541
PALB2
GSM997542
P-Ser2
GSM997543
PolyA+ RNA - lane1
GSM997544
PolyA+ RNA - lane2
GSM997545
CTRL sh-lane1
GSM997546
CTRL sh-lane2
GSM997547
BRCA1 sh-lane1
GSM997548
BRCA1 sh-lane2
GSM997549
PALB2 sh-lane1
GSM997550
PALB2 sh-lane2
GSM1112383
MCF7_SCR_unstimulated rep1
GSM1112384
MCF7_SCR_TNF 1h rep1
GSM1112385
MCF7_BRCA1_unstimulated rep1
GSM1112386
MCF7_BRCA1_TNF 1h rep1
GSM1112387
MCF7_PALB2_unstimulated rep1
GSM1112388
MCF7_PALB2_TNF 1h rep1
GSM1112389
MCF7_p65_unstimulated rep1
GSM1112390
MCF7_p65_TNF 1h rep1
GSM1112391
MCF7_SCR_unstimulated rep2
GSM1112392
MCF7_SCR_TNF 1h rep2
GSM1112393
MCF7_BRCA1_unstimulated rep2
GSM1112394
MCF7_BRCA1_TNF 1h rep2
GSM1112395
MCF7_PALB2_unstimulated rep2
GSM1112396
MCF7_PALB2_TNF 1h rep2
GSM1112397
MCF7_p65_unstimulated rep2
GSM1112398
MCF7_p65_TNF 1h rep2
GSM1112399
MCF7_SCR_unstimulated rep3
GSM1112400
MCF7_SCR_TNF 1h rep3
GSM1112401
MCF7_BRCA1_unstimulated rep3
GSM1112402
MCF7_BRCA1_TNF 1h rep3
GSM1112403
MCF7_PALB2_unstimulated rep3
GSM1112404
MCF7_PALB2_TNF 1h rep3
GSM1112405
MCF7_p65_unstimulated rep3
GSM1112406
MCF7_p65_TNF 1h rep3
GSM1112407
MCF7_SCR_unstimuated_rep1
GSM1112408
MCF7_SCR_RA 24h_rep1
GSM1112409
MCF7_BRCA1_unstimuated_rep1
GSM1112410
MCF7_BRCA1_RA 24h_rep1
GSM1112411
MCF7_PALB2_unstimuated_rep1
GSM1112412
MCF7_PALB2_RA 24h_rep1
GSM1112413
MCF7_SCR_unstimuated_rep2
GSM1112414
MCF7_SCR_RA 24h_rep2
GSM1112415
MCF7_BRCA1_unstimuated_rep2
GSM1112416
MCF7_BRCA1_RA 24h_rep2
GSM1112417
MCF7_PALB2_unstimuated_rep2
GSM1112418
MCF7_PALB2_RA 24h_rep2
GSM1112419
MCF7_SCR_unstimuated_rep3
GSM1112420
MCF7_SCR_RA 24h_rep3
GSM1112421
MCF7_BRCA1_unstimuated_rep3
GSM1112422
MCF7_BRCA1_RA 24h_rep3
GSM1112423
MCF7_PALB2_unstimuated_rep3
GSM1112424
MCF7_PALB2_RA 24h_rep3
This SuperSeries is composed of the following SubSeries:
GSE40591
Genome-wide analysis of BRCA1 and PALB2 [ChIP-seq and RNA-seq]
GSE45713
Genome-wide analysis of BRCA1 and PALB2 [TNF-alpha stimulation]
GSE45714
Genome-wide analysis of BRCA1 and PALB2 [RA stimulation]
Relations
BioProject
PRJNA195926
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE45715_RAW.tar
734.3 Mb
(http)
(custom)
TAR (of BEDGRAPH, WIG)
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