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Series GSE45823 Query DataSets for GSE45823
Status Public on Sep 19, 2013
Title Campylobacter jejuni transcriptomic response to benzylisothiocyanate
Platform organism Campylobacter jejuni
Sample organism Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Experiment type Expression profiling by array
Summary Campylobacter jejuni is a widespread pathogen responsible for most of the food-borne gastrointestinal diseases in Europe. For pathogen control in the food industry, the use of natural antimicrobial molecules is a promising strategy to avoid antibiotic treatments. Isothiocyanates are natural antimicrobial compounds which also display anti-cancer activity. Several studies described the chemoprotective effect of isothiocyanates on eukaryotic cells, but the antimicrobial mechanism is still poorly understood.
We investigated the early cellular response of C. jejuni to benzylisothiocyanate (BITC) by both transcriptomic and physiological (respirometry, ATP content measurements and isolations of aggregated proteins).
 
Overall design To characterize the transcriptomic early response to benzylisothiocyanate, C. jejuni NCTC11168 were grown in 100 ml flasks containing 25 ml of MEMα medium plus 20 mM sodium pyruvate. At mid-log phase, 2µg/mL benzylisothiocyanate in ethanol, or the same volume of ethanol (control) was added to the flasks for 10 or 15 min prior to total RNA extraction and purification. Samples were then processed for microarray hybridization. Microarray data was acquired from two (10 minutes assay) or three (15 minutes assay) independent biological replicates and 6 to 9 technical replicates for each biological replicate (total number of measurement per gene = 42).
 
Contributor(s) DUFOUR V, STAHL M, ROSENFELD E, STINTZI A, BAYSSE C
Citation(s) 24014524
Submission date Apr 05, 2013
Last update date Sep 21, 2013
Contact name Virginie Dufour
E-mail(s) virginie.dufour.pro@gmail.com
Organization name Université Rennes 1
Street address 263 avenue du General Leclerc
City Rennes
ZIP/Postal code 35042
Country France
 
Platforms (1)
GPL6293 Stintzi Lab Campylobacter jejuni 1.9k array, version 4.0
Samples (42)
GSM1116001 10min_RB1RT1_1
GSM1116002 10min_RB1RT1_2
GSM1116003 10min_RB1RT1_3
Relations
BioProject PRJNA196429

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE45823_RAW.tar 9.3 Mb (http)(custom) TAR (of CSV)
Processed data included within Sample table

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