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Series GSE46431 Query DataSets for GSE46431
Status Public on Jan 01, 2014
Title Effect of photoperiod on feline adipose transcriptome profiles as assessed by RNA sequencing
Organism Felis catus
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: Photoperiod is known to cause physiological changes in seasonal mammals, including body weight, physical activity, and reproductive status. Because cats are seasonal breeders, we recently tested the effects of day length on resting metabolic rate, voluntary physical activity, and food intake. In that study, resting metabolic rate, physical activity, and food intake to maintain body weight were greater in cats exposed to long days vs. short days. Because photoperiod has also been demonstrated to affect adipose tissue gene expression in several species, including dairy cows, sheep, and Siberian hamsters, the objective of this study was to determine the effects of day length on the adipose transcriptome profile of cats as assessed by RNA-seq.
Methods: Ten healthy adult neutered male domestic shorthair cats were used in a randomized crossover design study. During two 12-wk periods, cats were exposed to either short days (8 hr light:16 hr dark) or long days (16 hr light:8 hr dark). Cats were fed a commercial diet to maintain baseline body weight. Subcutaneous adipose biopsies were collected at wk 12 of each period for RNA isolation and Illumina sequencing.
Results: A total of 578 million sequences (28.9 million/sample) were generated by Illumina sequencing. Using a raw p value of P<0.005, 170 mRNA transcripts were differentially expressed between short day- and long day-housed cats. Of the 170 transcripts highlighted, 25 annotated transcripts were up-regulated, while 116 annotated transcripts were down-regulated by long days. Another 29 un-annotated transcripts (name and function not known) were also different between groups. In general, adipose tissue of long day-housed cats had greater expression of genes involved with cholesterol trafficking, fatty acid synthesis and immune function, and lower expression of genes involved with cell cycle and growth, cell development and structure, and protein processing, when compared to short day-housed cats.
 
Overall design Subcutaneous adipose tissue mRNA profiles of healthy adult neutered male cats exposed to short days (8 hr light: 16 hr dark) or long days (16 hr light: 8 hr dark) using Illumina sequencing.
 
Contributor(s) Swanson KS
Citation(s) 24992939
Submission date Apr 26, 2013
Last update date Aug 01, 2019
Contact name Kelly Scott Swanson
E-mail(s) ksswanso@uiuc.edu
Organization name University of Illinois
Street address 1207 W. Gregory Dr.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platforms (1)
GPL17081 Illumina HiSeq 2000 (Felis catus)
Samples (20)
GSM1130067 Short Day - rep 1
GSM1130068 Long Day - rep 1
GSM1130069 Long Day - rep 2
Relations
BioProject PRJNA200316
SRA SRP021539

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46431_Swanson_gene_cts.txt.gz 583.6 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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