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Series GSE48537 Query DataSets for GSE48537
Status Public on Aug 20, 2013
Title Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome
Platform organisms Bacteria; Bacteroides thetaiotaomicron VPI-5482; Bacteroides cellulosilyticus; Bacteroides sp. WH2; Blautia obeum ATCC 29174; [Ruminococcus] torques ATCC 27756; Dorea longicatena DSM 13814; [Clostridium] scindens ATCC 35704; Bacteroides ovatus ATCC 8483; Bacteroides uniformis ATCC 8492; Faecalibacterium prausnitzii M21/2; Bacteroides caccae ATCC 43185; Collinsella aerofaciens ATCC 25986; Thomasclavelia spiroformis DSM 1552; Phocaeicola vulgatus ATCC 8482; Parabacteroides distasonis ATCC 8503; Agathobacter rectalis ATCC 33656
Sample organisms Bacteria; Bacteroides thetaiotaomicron VPI-5482; Bacteroides cellulosilyticus; Bacteroides sp. WH2; Blautia obeum ATCC 29174; Dorea longicatena DSM 13814; [Clostridium] scindens ATCC 35704; Bacteroides ovatus ATCC 8483; Bacteroides uniformis ATCC 8492; Bacteroides caccae ATCC 43185; Collinsella aerofaciens ATCC 25986; Thomasclavelia spiroformis DSM 1552; Phocaeicola vulgatus ATCC 8482; Parabacteroides distasonis ATCC 8503
Experiment type Expression profiling by high throughput sequencing
Other
Expression profiling by array
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 23976882
Submission date Jul 03, 2013
Last update date May 15, 2019
Contact name Nathan P McNulty
E-mail(s) nathan.p.mcnulty@gmail.com
Phone 314-362-3963
Organization name Washington University School of Medicine
Department Center for Genome Sciences and Systems Biology
Lab Gordon
Street address 4444 Forest Park Ave. (5th Floor)
City Saint Louis
State/province MO
ZIP/Postal code 63108
Country USA
 
Platforms (5)
GPL9803 [SynComm1a520717] SynComm1: Synthetic Human Gut Community GeneChip, v1.0
GPL11535 Illumina Genome Analyzer II (Bacteria)
GPL17329 Illumina Genome Analyzer (Bacteria)
Samples (895)
GSM1171968 E1-01-01
GSM1171969 E1-01-02
GSM1171970 E1-01-05
This SuperSeries is composed of the following SubSeries:
GSE48193 Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome (COPRO-Seq)
GSE48532 Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome (GeneChip)
GSE48993 Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome (RNA-Seq)
Relations
BioProject PRJNA210447

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48537_RAW.tar 962.6 Mb (http)(custom) TAR (of CEL, CHP, TXT)
SRA Run SelectorHelp

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