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Series GSE4857 Query DataSets for GSE4857
Status Public on Jul 31, 2007
Title Methylation profiling in pediatric medulloblastoma
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Whole-genome screening of CpG Island methylation status by array-based profiling of absolute methylation status (array-PAMS).
Keywords: methylation profiling, pediatric medulloblastoma, single sample
 
Overall design Methylation-specifically digested DNA (Cy3) was hybridized against methylation-sensitively digested DNA (Cy5) from the same sample. CGI methylation in 20 pediatric medulloblastomas (M) and normal cerebellum (Cb, pool of five unaffected donors, age 25–33 years)
 
Contributor(s) Pfister SM, Schlaeger C, Radlwimmer B, Lichter P
Citation(s)
  • Pfister S, Schlaeger C, Mendrzyk F, Wittmann A et al. Array-based profiling of reference-independent methylation status (aPRIMES) identifies frequent promoter methylation and consecutive downregulation of ZIC2 in pediatric medulloblastoma. Nucleic Acids Res 2007;35(7):e51. PMID: 17344319
Submission date May 17, 2006
Last update date Mar 16, 2012
Contact name Stefan M Pfister
E-mail(s) s.pfister@dkfz.de
Phone +49 6221 424593
Fax +49 6221 424639
URL http://www.dkfz.de/en/genetics/staff/staff_detail/s_pfister.html
Organization name German Cancer Research Center
Department Molecular Genetics
Lab P. Lichter
Street address INF 580
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platforms (1)
GPL3768 DKFZ CpG Island Chip
Samples (22)
GSM109149 M12
GSM109154 M7
GSM109156 M13
Relations
BioProject PRJNA95829

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE4857_normalized_chip_data_GEO.txt 2.4 Mb (ftp)(http) TXT
Processed data are available on Series record

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