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Series GSE49256 Query DataSets for GSE49256
Status Public on Aug 13, 2013
Title The role of the Cj0440c gene in Campylobacter jejuni
Organism Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Experiment type Expression profiling by array
Summary Cj0440c encodes a putative transcriptional regulator. To determine the role of Cj0440c in C.jejuni, we knocked out Cj0440c in the wild-type strain (S) to obtain the Cj0440c mutants (SM). Then we compared the transcriptome of the Cj0440c mutant with that of the parent strain using DNA microarray. These comparisons identified 19 genes that showed a≥2-fold change in expression in SM. The differentially expressed genes in SM encode proteins involved in flagellar biosynthesis, O-linked glycosylation and hypothetical proteins with unknown fuctions. Cj0440c may regulate flagellar structural element expression or as a compenent of flagellar complex co-expressed with other flagellar genes. Subsequent experiments demonstrated that inactivation of Cj0440c affected corresponding phenotypes of C.jejuni, including broken flagella, weaker motility and reduced colonization ability in chickens.
These findings indicate that Cj0440c governs the expression of multiple genes related to flagellar biosynthesis and O-linked glycosylation. This study provides favorable evidence for completing the information of the Campylobacter jejuni genome.
 
Overall design An eight chip study using total RNA recoverd from four separate wild-type cultures of Campylobacter jejuni NCTC111168 (S) and four separate cultures of a mutant strain, Campylobacter jejuni NCTC11168 delta- Cj0440c (SM), in which Cj0440c is deleted. Each chip measures the expression level of 1634 genes from Campylobacter jejuni NCTC11168.
 
Contributor(s) Fang X, Hao H, Yuan Z
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Submission date Jul 26, 2013
Last update date Aug 15, 2013
Contact name Xia Fang
E-mail(s) fangxia1007@163.com
Phone 027-87287140
Organization name Huazhong Agricultural University
Lab National Reference Laboratory of Veterinary Drug Residues
Street address Shizishan Street
City wuhan
State/province hubei
ZIP/Postal code 430070
Country China
 
Platforms (1)
GPL17410 NimbleGen Campylobacter jejuni NCTC11168 Whole-Genome microarray [080328_C_jejuni_NCTC_11168_expr]
Samples (8)
GSM1207141 S3-1
GSM1207142 S2
GSM1207143 S3-2
Relations
BioProject PRJNA214940

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49256_RAW.tar 21.0 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table
Processed data provided as supplementary file

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