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| Status |
Public on Jun 29, 2015 |
| Title |
CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds [Agilent] |
| Organism |
Sus scrofa |
| Experiment type |
Genome variation profiling by genome tiling array
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| Summary |
Since CNVs play a vital role in genomic studies, it is an imperative need to develop a comprehensive, more accurate and higher resolution porcine CNV map with practical significance in follow-up CNV functional analyses
To detect CNV of pigs, we performed high density aCGH data of diverse pig breeds in the framework of the pig draft genome sequence (Sscrofa10.2)
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| Overall design |
9 Chinese indigenous pig, one Chinese wild boar and 2 commercial pigs were detected using one pig of Duroc as reference.
These 12 animals include 1 wild pig, 2 pigs each from Yorkshire and Landrace as the representatives of modern commercial breeds and 9 unrelated individuals selected from 6 Chinese indigenous breeds (2- Tibetan pig, 2- Diannan small-ear pig, 2-Meishan pig, 1- Min pig, 1-Daweizi pig, and 1-Rongchang pig).
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| Contributor(s) |
Liu J, Wang J, Jiang J |
| Citation(s) |
25908567 |
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| Submission date |
Jul 29, 2013 |
| Last update date |
Jun 29, 2015 |
| Contact name |
Huimin Kang |
| E-mail(s) |
nongdaxiaokang@126.com
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| Phone |
18810882762
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| Organization name |
China Agriculture University
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| Street address |
Beijing
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| City |
Beijing |
| State/province |
Beijing |
| ZIP/Postal code |
100193 |
| Country |
China |
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| Platforms (1) |
| GPL17469 |
Agilent-046637 Sus scrofa CGH array |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA213577 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE49299_RAW.tar |
3.0 Gb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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